Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1261 and GFF1262 are separated by 284 nucleotides GFF1262 and GFF1263 are separated by 52 nucleotides GFF1263 and GFF1264 overlap by 4 nucleotides
GFF1261 - no description, at 577,815 to 578,378
GFF1261
GFF1262 - Rhodanese-related sulfurtransferase, at 578,663 to 579,148
GFF1262
GFF1263 - Serine acetyltransferase (EC 2.3.1.30), at 579,201 to 580,118
GFF1263
GFF1264 - Transcriptional regulator, Xre family, at 580,115 to 580,384
GFF1264
Position (kb) 578
579
580 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 577.692 kb on + strand at 577.763 kb on - strand at 577.793 kb on + strand at 577.793 kb on + strand at 577.794 kb on - strand at 577.794 kb on - strand at 577.900 kb on - strand, within GFF1261 at 577.912 kb on - strand, within GFF1261 at 577.912 kb on - strand, within GFF1261 at 577.912 kb on - strand, within GFF1261 at 578.028 kb on + strand, within GFF1261 at 578.028 kb on + strand, within GFF1261 at 578.055 kb on + strand, within GFF1261 at 578.056 kb on - strand, within GFF1261 at 578.056 kb on - strand, within GFF1261 at 578.106 kb on - strand, within GFF1261 at 578.106 kb on - strand, within GFF1261 at 578.215 kb on - strand, within GFF1261 at 578.215 kb on - strand, within GFF1261 at 578.380 kb on - strand at 578.476 kb on + strand at 578.476 kb on + strand at 578.477 kb on - strand at 578.533 kb on - strand at 578.546 kb on + strand at 578.562 kb on + strand at 578.606 kb on + strand at 578.606 kb on + strand at 578.607 kb on - strand at 578.607 kb on - strand at 578.821 kb on - strand, within GFF1262 at 578.821 kb on - strand, within GFF1262 at 579.178 kb on + strand at 579.178 kb on + strand at 579.179 kb on - strand at 579.601 kb on - strand, within GFF1263 at 579.696 kb on + strand, within GFF1263 at 579.696 kb on + strand, within GFF1263 at 579.697 kb on - strand, within GFF1263 at 579.864 kb on + strand, within GFF1263 at 579.969 kb on + strand, within GFF1263 at 579.969 kb on + strand, within GFF1263
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 577,692 + +0.8 577,763 - -2.8 577,793 + -0.8 577,793 + -0.6 577,794 - -2.0 577,794 - -1.4 577,900 - GFF1261 0.15 -2.6 577,912 - GFF1261 0.17 +3.3 577,912 - GFF1261 0.17 -0.8 577,912 - GFF1261 0.17 -3.0 578,028 + GFF1261 0.38 -0.2 578,028 + GFF1261 0.38 -2.4 578,055 + GFF1261 0.43 -1.1 578,056 - GFF1261 0.43 -1.8 578,056 - GFF1261 0.43 +0.8 578,106 - GFF1261 0.52 -1.2 578,106 - GFF1261 0.52 -1.9 578,215 - GFF1261 0.71 +1.3 578,215 - GFF1261 0.71 -1.8 578,380 - -0.1 578,476 + -0.4 578,476 + -3.3 578,477 - -1.9 578,533 - -1.6 578,546 + +0.0 578,562 + -0.5 578,606 + -2.4 578,606 + -1.5 578,607 - -0.4 578,607 - +0.5 578,821 - GFF1262 0.33 -3.4 578,821 - GFF1262 0.33 -1.0 579,178 + -0.6 579,178 + -0.0 579,179 - +0.6 579,601 - GFF1263 0.44 -0.4 579,696 + GFF1263 0.54 -3.3 579,696 + GFF1263 0.54 -4.2 579,697 - GFF1263 0.54 +0.4 579,864 + GFF1263 0.72 -2.3 579,969 + GFF1263 0.84 -0.1 579,969 + GFF1263 0.84 +1.0
Or see this region's nucleotide sequence