Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1245 and GFF1246 are separated by 7 nucleotides GFF1246 and GFF1247 are separated by 137 nucleotides
GFF1245 - tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC 2.1.1.61) / FAD-dependent cmnm(5)s(2)U34 oxidoreductase, at 564,316 to 566,157
GFF1245
GFF1246 - FIG001341: Probable Fe(2+)-trafficking protein YggX, at 566,165 to 566,437
GFF1246
GFF1247 - Sulfate and thiosulfate binding protein CysP, at 566,575 to 567,615
GFF1247
Position (kb) 566
567 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 565.517 kb on + strand, within GFF1245 at 565.517 kb on + strand, within GFF1245 at 565.517 kb on + strand, within GFF1245 at 565.518 kb on - strand, within GFF1245 at 565.518 kb on - strand, within GFF1245 at 565.518 kb on - strand, within GFF1245 at 565.518 kb on - strand, within GFF1245 at 565.518 kb on - strand, within GFF1245 at 565.518 kb on - strand, within GFF1245 at 565.518 kb on - strand, within GFF1245 at 565.518 kb on - strand, within GFF1245 at 565.518 kb on - strand, within GFF1245 at 565.518 kb on - strand, within GFF1245 at 565.518 kb on - strand, within GFF1245 at 565.538 kb on + strand, within GFF1245 at 565.539 kb on - strand, within GFF1245 at 565.539 kb on - strand, within GFF1245 at 565.844 kb on + strand, within GFF1245 at 565.845 kb on - strand, within GFF1245 at 566.090 kb on + strand at 566.090 kb on + strand at 566.090 kb on + strand at 566.090 kb on + strand at 566.090 kb on + strand at 566.090 kb on + strand at 566.090 kb on + strand at 566.090 kb on + strand at 566.090 kb on + strand at 566.090 kb on + strand at 566.090 kb on + strand at 566.090 kb on + strand at 566.090 kb on + strand at 566.090 kb on + strand at 566.090 kb on + strand at 566.090 kb on + strand at 566.090 kb on + strand at 566.090 kb on + strand at 566.090 kb on + strand at 566.090 kb on + strand at 566.091 kb on - strand at 566.091 kb on - strand at 566.091 kb on - strand at 566.091 kb on - strand at 566.091 kb on - strand at 566.091 kb on - strand at 566.091 kb on - strand at 566.091 kb on - strand at 566.091 kb on - strand at 566.091 kb on - strand at 566.091 kb on - strand at 566.091 kb on - strand at 566.091 kb on - strand at 566.091 kb on - strand at 566.091 kb on - strand at 566.091 kb on - strand at 566.091 kb on - strand at 566.091 kb on - strand at 566.091 kb on - strand at 566.093 kb on - strand at 566.184 kb on + strand at 566.184 kb on + strand at 566.184 kb on + strand at 566.184 kb on + strand at 566.184 kb on + strand at 566.184 kb on + strand at 566.184 kb on + strand at 566.184 kb on + strand at 566.184 kb on + strand at 566.185 kb on - strand at 566.185 kb on - strand at 566.185 kb on - strand at 566.185 kb on - strand at 566.185 kb on - strand at 566.185 kb on - strand at 566.185 kb on - strand at 566.185 kb on - strand at 566.185 kb on - strand at 566.185 kb on - strand at 566.185 kb on - strand at 566.244 kb on + strand, within GFF1246 at 566.244 kb on + strand, within GFF1246 at 566.244 kb on + strand, within GFF1246 at 566.244 kb on + strand, within GFF1246 at 566.245 kb on - strand, within GFF1246 at 566.245 kb on - strand, within GFF1246 at 566.470 kb on + strand at 566.470 kb on + strand at 566.470 kb on + strand at 566.470 kb on + strand at 566.470 kb on + strand at 566.470 kb on + strand at 566.470 kb on + strand at 566.470 kb on + strand at 566.470 kb on + strand at 566.470 kb on + strand at 566.470 kb on + strand at 566.471 kb on - strand at 566.471 kb on - strand at 566.471 kb on - strand at 566.471 kb on - strand at 566.471 kb on - strand at 566.471 kb on - strand at 566.483 kb on + strand at 566.483 kb on + strand at 566.487 kb on + strand at 566.487 kb on + strand at 566.488 kb on - strand at 566.516 kb on + strand at 566.518 kb on - strand at 566.518 kb on - strand at 566.519 kb on + strand at 566.519 kb on + strand at 566.520 kb on - strand at 566.520 kb on - strand at 566.520 kb on - strand at 566.526 kb on + strand at 566.527 kb on - strand at 566.535 kb on + strand at 566.535 kb on + strand at 566.535 kb on + strand at 566.552 kb on - strand at 566.552 kb on - strand at 566.561 kb on + strand at 566.562 kb on - strand at 566.595 kb on + strand at 566.595 kb on + strand at 566.701 kb on + strand, within GFF1247 at 566.701 kb on + strand, within GFF1247 at 566.701 kb on + strand, within GFF1247 at 566.701 kb on + strand, within GFF1247 at 566.701 kb on + strand, within GFF1247 at 566.701 kb on + strand, within GFF1247 at 566.701 kb on + strand, within GFF1247 at 566.702 kb on - strand, within GFF1247 at 566.702 kb on - strand, within GFF1247 at 566.702 kb on - strand, within GFF1247 at 566.702 kb on - strand, within GFF1247 at 566.722 kb on + strand, within GFF1247 at 566.722 kb on + strand, within GFF1247 at 566.722 kb on + strand, within GFF1247 at 566.722 kb on + strand, within GFF1247 at 566.722 kb on + strand, within GFF1247 at 566.722 kb on + strand, within GFF1247 at 566.722 kb on + strand, within GFF1247 at 566.722 kb on + strand, within GFF1247 at 566.722 kb on + strand, within GFF1247 at 566.722 kb on + strand, within GFF1247 at 566.723 kb on - strand, within GFF1247 at 566.723 kb on - strand, within GFF1247 at 566.723 kb on - strand, within GFF1247 at 566.723 kb on - strand, within GFF1247 at 566.731 kb on + strand, within GFF1247 at 566.731 kb on + strand, within GFF1247 at 566.731 kb on + strand, within GFF1247 at 566.732 kb on - strand, within GFF1247 at 566.732 kb on - strand, within GFF1247 at 566.732 kb on - strand, within GFF1247 at 566.732 kb on - strand, within GFF1247 at 566.752 kb on + strand, within GFF1247 at 566.752 kb on + strand, within GFF1247 at 566.753 kb on - strand, within GFF1247 at 566.753 kb on - strand, within GFF1247 at 566.753 kb on - strand, within GFF1247 at 566.753 kb on - strand, within GFF1247 at 566.953 kb on + strand, within GFF1247 at 566.953 kb on + strand, within GFF1247 at 566.953 kb on + strand, within GFF1247 at 566.953 kb on + strand, within GFF1247 at 566.954 kb on - strand, within GFF1247 at 566.954 kb on - strand, within GFF1247 at 566.954 kb on - strand, within GFF1247 at 567.085 kb on + strand, within GFF1247 at 567.085 kb on + strand, within GFF1247 at 567.085 kb on + strand, within GFF1247 at 567.085 kb on + strand, within GFF1247 at 567.085 kb on + strand, within GFF1247 at 567.085 kb on + strand, within GFF1247 at 567.086 kb on - strand, within GFF1247 at 567.086 kb on - strand, within GFF1247 at 567.118 kb on + strand, within GFF1247 at 567.118 kb on + strand, within GFF1247 at 567.145 kb on + strand, within GFF1247 at 567.145 kb on + strand, within GFF1247 at 567.145 kb on + strand, within GFF1247 at 567.145 kb on + strand, within GFF1247 at 567.145 kb on + strand, within GFF1247 at 567.145 kb on + strand, within GFF1247 at 567.146 kb on - strand, within GFF1247 at 567.146 kb on - strand, within GFF1247 at 567.146 kb on - strand, within GFF1247 at 567.146 kb on - strand, within GFF1247 at 567.146 kb on - strand, within GFF1247 at 567.146 kb on - strand, within GFF1247 at 567.375 kb on + strand, within GFF1247 at 567.397 kb on + strand, within GFF1247 at 567.397 kb on + strand, within GFF1247 at 567.397 kb on + strand, within GFF1247 at 567.398 kb on - strand, within GFF1247 at 567.398 kb on - strand, within GFF1247 at 567.398 kb on - strand, within GFF1247 at 567.406 kb on + strand, within GFF1247 at 567.406 kb on + strand, within GFF1247 at 567.406 kb on + strand, within GFF1247 at 567.406 kb on + strand, within GFF1247 at 567.406 kb on + strand, within GFF1247 at 567.407 kb on - strand, within GFF1247 at 567.407 kb on - strand, within GFF1247 at 567.407 kb on - strand, within GFF1247 at 567.407 kb on - strand, within GFF1247 at 567.407 kb on - strand, within GFF1247 at 567.412 kb on + strand, within GFF1247 at 567.412 kb on + strand, within GFF1247 at 567.412 kb on + strand, within GFF1247 at 567.413 kb on - strand, within GFF1247 at 567.413 kb on - strand, within GFF1247
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 565,517 + GFF1245 0.65 -2.0 565,517 + GFF1245 0.65 -3.0 565,517 + GFF1245 0.65 -0.7 565,518 - GFF1245 0.65 -2.3 565,518 - GFF1245 0.65 -1.4 565,518 - GFF1245 0.65 -0.0 565,518 - GFF1245 0.65 -0.4 565,518 - GFF1245 0.65 -0.4 565,518 - GFF1245 0.65 -1.9 565,518 - GFF1245 0.65 -0.3 565,518 - GFF1245 0.65 +1.9 565,518 - GFF1245 0.65 +1.0 565,518 - GFF1245 0.65 -2.0 565,518 - GFF1245 0.65 -0.4 565,538 + GFF1245 0.66 +1.6 565,539 - GFF1245 0.66 -2.0 565,539 - GFF1245 0.66 -2.5 565,844 + GFF1245 0.83 -0.2 565,845 - GFF1245 0.83 +0.2 566,090 + +1.3 566,090 + -1.4 566,090 + -0.3 566,090 + -1.0 566,090 + -1.4 566,090 + +1.0 566,090 + +2.8 566,090 + -2.0 566,090 + -1.9 566,090 + -2.1 566,090 + -0.0 566,090 + -0.6 566,090 + +0.3 566,090 + +0.8 566,090 + -0.8 566,090 + -1.1 566,090 + +0.2 566,090 + -1.3 566,090 + -1.0 566,090 + -0.2 566,091 - -2.8 566,091 - -1.4 566,091 - -4.0 566,091 - -1.2 566,091 - -3.7 566,091 - -2.2 566,091 - +1.4 566,091 - -1.8 566,091 - -0.1 566,091 - +1.5 566,091 - -0.2 566,091 - +3.3 566,091 - -1.0 566,091 - -0.0 566,091 - +0.2 566,091 - +0.6 566,091 - -2.9 566,091 - -0.1 566,091 - -1.8 566,093 - +0.0 566,184 + -3.6 566,184 + -2.1 566,184 + -2.3 566,184 + -0.8 566,184 + +1.1 566,184 + +0.6 566,184 + -0.0 566,184 + -0.8 566,184 + -1.3 566,185 - -1.4 566,185 - +0.5 566,185 - +0.4 566,185 - -0.4 566,185 - -1.5 566,185 - -1.1 566,185 - -2.8 566,185 - -3.5 566,185 - +0.5 566,185 - +1.4 566,185 - -2.0 566,244 + GFF1246 0.29 -1.5 566,244 + GFF1246 0.29 -1.2 566,244 + GFF1246 0.29 -1.8 566,244 + GFF1246 0.29 -3.0 566,245 - GFF1246 0.29 -0.4 566,245 - GFF1246 0.29 -2.2 566,470 + +0.4 566,470 + -0.4 566,470 + -1.8 566,470 + -0.2 566,470 + +0.4 566,470 + -1.0 566,470 + +0.3 566,470 + -0.5 566,470 + -2.1 566,470 + -0.6 566,470 + -2.4 566,471 - +0.1 566,471 - -0.0 566,471 - -0.4 566,471 - +1.1 566,471 - -0.0 566,471 - -1.8 566,483 + -2.3 566,483 + -1.6 566,487 + -1.1 566,487 + -0.9 566,488 - -0.1 566,516 + +0.6 566,518 - -1.9 566,518 - -0.0 566,519 + -0.2 566,519 + -2.8 566,520 - -0.0 566,520 - -0.4 566,520 - +2.6 566,526 + -0.3 566,527 - +0.2 566,535 + +2.2 566,535 + +1.1 566,535 + -0.4 566,552 - -1.5 566,552 - +0.1 566,561 + +1.3 566,562 - -0.5 566,595 + -2.2 566,595 + +0.4 566,701 + GFF1247 0.12 -2.2 566,701 + GFF1247 0.12 -0.1 566,701 + GFF1247 0.12 +1.1 566,701 + GFF1247 0.12 -0.1 566,701 + GFF1247 0.12 +0.7 566,701 + GFF1247 0.12 -2.2 566,701 + GFF1247 0.12 -0.1 566,702 - GFF1247 0.12 +0.5 566,702 - GFF1247 0.12 +0.5 566,702 - GFF1247 0.12 +1.7 566,702 - GFF1247 0.12 +1.1 566,722 + GFF1247 0.14 +0.3 566,722 + GFF1247 0.14 +1.8 566,722 + GFF1247 0.14 -0.3 566,722 + GFF1247 0.14 +0.6 566,722 + GFF1247 0.14 -1.8 566,722 + GFF1247 0.14 -0.4 566,722 + GFF1247 0.14 +0.9 566,722 + GFF1247 0.14 +1.0 566,722 + GFF1247 0.14 +0.2 566,722 + GFF1247 0.14 +1.6 566,723 - GFF1247 0.14 -1.9 566,723 - GFF1247 0.14 +0.1 566,723 - GFF1247 0.14 -3.8 566,723 - GFF1247 0.14 -2.6 566,731 + GFF1247 0.15 -2.1 566,731 + GFF1247 0.15 +0.4 566,731 + GFF1247 0.15 +0.6 566,732 - GFF1247 0.15 -2.9 566,732 - GFF1247 0.15 -0.1 566,732 - GFF1247 0.15 +1.6 566,732 - GFF1247 0.15 -1.2 566,752 + GFF1247 0.17 +0.1 566,752 + GFF1247 0.17 -0.8 566,753 - GFF1247 0.17 +2.9 566,753 - GFF1247 0.17 -2.2 566,753 - GFF1247 0.17 -2.6 566,753 - GFF1247 0.17 -1.9 566,953 + GFF1247 0.36 -1.7 566,953 + GFF1247 0.36 -0.9 566,953 + GFF1247 0.36 +0.3 566,953 + GFF1247 0.36 -2.6 566,954 - GFF1247 0.36 -2.5 566,954 - GFF1247 0.36 +0.5 566,954 - GFF1247 0.36 -2.1 567,085 + GFF1247 0.49 -1.6 567,085 + GFF1247 0.49 -2.9 567,085 + GFF1247 0.49 +0.6 567,085 + GFF1247 0.49 -1.4 567,085 + GFF1247 0.49 -1.2 567,085 + GFF1247 0.49 +1.2 567,086 - GFF1247 0.49 -0.1 567,086 - GFF1247 0.49 -0.4 567,118 + GFF1247 0.52 +0.1 567,118 + GFF1247 0.52 +0.0 567,145 + GFF1247 0.55 -3.7 567,145 + GFF1247 0.55 -2.4 567,145 + GFF1247 0.55 -1.2 567,145 + GFF1247 0.55 -0.5 567,145 + GFF1247 0.55 +2.6 567,145 + GFF1247 0.55 +1.4 567,146 - GFF1247 0.55 -2.5 567,146 - GFF1247 0.55 -1.4 567,146 - GFF1247 0.55 -0.8 567,146 - GFF1247 0.55 -1.0 567,146 - GFF1247 0.55 -2.7 567,146 - GFF1247 0.55 +0.9 567,375 + GFF1247 0.77 -1.4 567,397 + GFF1247 0.79 +0.2 567,397 + GFF1247 0.79 -0.0 567,397 + GFF1247 0.79 -1.4 567,398 - GFF1247 0.79 +0.3 567,398 - GFF1247 0.79 -1.2 567,398 - GFF1247 0.79 +1.0 567,406 + GFF1247 0.80 -1.4 567,406 + GFF1247 0.80 +0.0 567,406 + GFF1247 0.80 +1.3 567,406 + GFF1247 0.80 -1.4 567,406 + GFF1247 0.80 -1.9 567,407 - GFF1247 0.80 +1.6 567,407 - GFF1247 0.80 -0.6 567,407 - GFF1247 0.80 -2.1 567,407 - GFF1247 0.80 -0.8 567,407 - GFF1247 0.80 -1.6 567,412 + GFF1247 0.80 -0.4 567,412 + GFF1247 0.80 -1.8 567,412 + GFF1247 0.80 -1.6 567,413 - GFF1247 0.80 -1.9 567,413 - GFF1247 0.80 -0.8
Or see this region's nucleotide sequence