Strain Fitness in Variovorax sp. SCN45 around GFF1241

Experiment: Community=arabino-guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1240 and GFF1241 are separated by 139 nucleotidesGFF1241 and GFF1242 are separated by 44 nucleotides GFF1240 - Enoyl-CoA hydratase (EC 4.2.1.17), at 558,901 to 559,824 GFF1240 GFF1241 - Glycerophosphoryl diester phosphodiesterase (EC 3.1.4.46) periplasmic (secreted in GramPositives), at 559,964 to 561,175 GFF1241 GFF1242 - hypothetical protein, at 561,220 to 562,743 GFF1242 Position (kb) 559 560 561 562Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 559.020 kb on - strand, within GFF1240at 559.020 kb on - strand, within GFF1240at 559.120 kb on + strand, within GFF1240at 559.120 kb on + strand, within GFF1240at 559.121 kb on - strand, within GFF1240at 559.121 kb on - strand, within GFF1240at 559.201 kb on + strand, within GFF1240at 559.201 kb on + strand, within GFF1240at 559.201 kb on + strand, within GFF1240at 559.201 kb on + strand, within GFF1240at 559.201 kb on + strand, within GFF1240at 559.201 kb on + strand, within GFF1240at 559.201 kb on + strand, within GFF1240at 559.201 kb on + strand, within GFF1240at 559.202 kb on - strand, within GFF1240at 559.202 kb on - strand, within GFF1240at 559.357 kb on + strand, within GFF1240at 559.357 kb on + strand, within GFF1240at 559.357 kb on + strand, within GFF1240at 559.358 kb on - strand, within GFF1240at 559.358 kb on - strand, within GFF1240at 559.358 kb on - strand, within GFF1240at 559.406 kb on - strand, within GFF1240at 559.926 kb on + strandat 559.927 kb on - strandat 559.940 kb on + strandat 559.941 kb on - strandat 559.961 kb on + strandat 559.961 kb on + strandat 559.961 kb on + strandat 560.195 kb on + strand, within GFF1241at 560.196 kb on - strand, within GFF1241at 560.196 kb on - strand, within GFF1241at 560.196 kb on - strand, within GFF1241at 560.196 kb on - strand, within GFF1241at 560.392 kb on + strand, within GFF1241at 560.392 kb on + strand, within GFF1241at 560.393 kb on - strand, within GFF1241at 560.492 kb on + strand, within GFF1241at 560.493 kb on - strand, within GFF1241at 560.583 kb on - strand, within GFF1241at 560.583 kb on - strand, within GFF1241at 560.583 kb on - strand, within GFF1241at 560.583 kb on - strand, within GFF1241at 560.606 kb on + strand, within GFF1241at 560.606 kb on + strand, within GFF1241at 560.607 kb on - strand, within GFF1241at 560.607 kb on - strand, within GFF1241at 560.607 kb on - strand, within GFF1241at 560.768 kb on + strand, within GFF1241at 560.819 kb on + strand, within GFF1241at 560.819 kb on + strand, within GFF1241at 560.819 kb on + strand, within GFF1241at 560.820 kb on - strand, within GFF1241at 560.820 kb on - strand, within GFF1241at 560.820 kb on - strand, within GFF1241at 560.820 kb on - strand, within GFF1241at 560.864 kb on + strand, within GFF1241at 560.864 kb on + strand, within GFF1241at 560.864 kb on + strand, within GFF1241at 560.864 kb on + strand, within GFF1241at 560.865 kb on - strand, within GFF1241at 560.865 kb on - strand, within GFF1241at 560.865 kb on - strand, within GFF1241at 561.054 kb on - strandat 561.054 kb on - strandat 561.173 kb on + strandat 561.317 kb on + strandat 561.318 kb on - strandat 561.512 kb on + strand, within GFF1242at 561.512 kb on + strand, within GFF1242at 561.512 kb on + strand, within GFF1242at 561.512 kb on + strand, within GFF1242at 561.512 kb on + strand, within GFF1242at 561.512 kb on + strand, within GFF1242at 561.512 kb on + strand, within GFF1242at 561.512 kb on + strand, within GFF1242at 561.513 kb on - strand, within GFF1242at 561.513 kb on - strand, within GFF1242at 561.539 kb on + strand, within GFF1242at 561.539 kb on + strand, within GFF1242at 561.539 kb on + strand, within GFF1242at 561.539 kb on + strand, within GFF1242at 561.539 kb on + strand, within GFF1242at 561.539 kb on + strand, within GFF1242at 561.539 kb on + strand, within GFF1242at 561.539 kb on + strand, within GFF1242at 561.540 kb on - strand, within GFF1242at 561.540 kb on - strand, within GFF1242at 561.540 kb on - strand, within GFF1242at 561.540 kb on - strand, within GFF1242at 561.540 kb on - strand, within GFF1242at 561.540 kb on - strand, within GFF1242at 561.710 kb on + strand, within GFF1242at 561.710 kb on + strand, within GFF1242at 561.711 kb on - strand, within GFF1242at 561.872 kb on + strand, within GFF1242at 561.872 kb on + strand, within GFF1242at 561.873 kb on - strand, within GFF1242at 561.873 kb on - strand, within GFF1242at 561.873 kb on - strand, within GFF1242at 561.873 kb on - strand, within GFF1242at 561.977 kb on + strand, within GFF1242at 562.029 kb on - strand, within GFF1242at 562.029 kb on - strand, within GFF1242at 562.067 kb on - strand, within GFF1242at 562.082 kb on + strand, within GFF1242at 562.082 kb on + strand, within GFF1242at 562.082 kb on + strand, within GFF1242at 562.083 kb on - strand, within GFF1242at 562.083 kb on - strand, within GFF1242at 562.083 kb on - strand, within GFF1242at 562.109 kb on + strand, within GFF1242at 562.109 kb on + strand, within GFF1242at 562.109 kb on + strand, within GFF1242at 562.109 kb on + strand, within GFF1242at 562.110 kb on - strand, within GFF1242at 562.110 kb on - strand, within GFF1242at 562.110 kb on - strand, within GFF1242at 562.110 kb on - strand, within GFF1242at 562.110 kb on - strand, within GFF1242at 562.110 kb on - strand, within GFF1242at 562.110 kb on - strand, within GFF1242

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4
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559,020 - GFF1240 0.13 +0.7
559,020 - GFF1240 0.13 +0.2
559,120 + GFF1240 0.24 +1.4
559,120 + GFF1240 0.24 -0.8
559,121 - GFF1240 0.24 -1.9
559,121 - GFF1240 0.24 -1.8
559,201 + GFF1240 0.32 -0.4
559,201 + GFF1240 0.32 +1.3
559,201 + GFF1240 0.32 -1.0
559,201 + GFF1240 0.32 -4.5
559,201 + GFF1240 0.32 -0.1
559,201 + GFF1240 0.32 -1.4
559,201 + GFF1240 0.32 -0.9
559,201 + GFF1240 0.32 +1.1
559,202 - GFF1240 0.33 -2.8
559,202 - GFF1240 0.33 -1.0
559,357 + GFF1240 0.49 -1.9
559,357 + GFF1240 0.49 -1.6
559,357 + GFF1240 0.49 -1.6
559,358 - GFF1240 0.49 -1.0
559,358 - GFF1240 0.49 -1.2
559,358 - GFF1240 0.49 -0.1
559,406 - GFF1240 0.55 -0.0
559,926 + +0.5
559,927 - +1.0
559,940 + -2.4
559,941 - -1.0
559,961 + -1.4
559,961 + -0.8
559,961 + +1.6
560,195 + GFF1241 0.19 -1.4
560,196 - GFF1241 0.19 -3.9
560,196 - GFF1241 0.19 -1.0
560,196 - GFF1241 0.19 -0.4
560,196 - GFF1241 0.19 -1.9
560,392 + GFF1241 0.35 -3.5
560,392 + GFF1241 0.35 -0.3
560,393 - GFF1241 0.35 -1.0
560,492 + GFF1241 0.44 -1.8
560,493 - GFF1241 0.44 +0.8
560,583 - GFF1241 0.51 +1.2
560,583 - GFF1241 0.51 -2.0
560,583 - GFF1241 0.51 -1.2
560,583 - GFF1241 0.51 -1.8
560,606 + GFF1241 0.53 -3.7
560,606 + GFF1241 0.53 -1.4
560,607 - GFF1241 0.53 -1.9
560,607 - GFF1241 0.53 -1.1
560,607 - GFF1241 0.53 +0.3
560,768 + GFF1241 0.66 +3.3
560,819 + GFF1241 0.71 -2.3
560,819 + GFF1241 0.71 -0.2
560,819 + GFF1241 0.71 +1.0
560,820 - GFF1241 0.71 +0.4
560,820 - GFF1241 0.71 -1.4
560,820 - GFF1241 0.71 -2.1
560,820 - GFF1241 0.71 -1.8
560,864 + GFF1241 0.74 -0.9
560,864 + GFF1241 0.74 +0.6
560,864 + GFF1241 0.74 +0.4
560,864 + GFF1241 0.74 -0.8
560,865 - GFF1241 0.74 -0.0
560,865 - GFF1241 0.74 -0.5
560,865 - GFF1241 0.74 -3.5
561,054 - -1.2
561,054 - +0.4
561,173 + -1.0
561,317 + +0.2
561,318 - -3.0
561,512 + GFF1242 0.19 +0.8
561,512 + GFF1242 0.19 -0.3
561,512 + GFF1242 0.19 +0.6
561,512 + GFF1242 0.19 -1.3
561,512 + GFF1242 0.19 +2.0
561,512 + GFF1242 0.19 -2.6
561,512 + GFF1242 0.19 -0.0
561,512 + GFF1242 0.19 -0.4
561,513 - GFF1242 0.19 +1.5
561,513 - GFF1242 0.19 -1.2
561,539 + GFF1242 0.21 -1.9
561,539 + GFF1242 0.21 -0.1
561,539 + GFF1242 0.21 +0.2
561,539 + GFF1242 0.21 +2.1
561,539 + GFF1242 0.21 -3.6
561,539 + GFF1242 0.21 -0.2
561,539 + GFF1242 0.21 +1.9
561,539 + GFF1242 0.21 +1.4
561,540 - GFF1242 0.21 +1.2
561,540 - GFF1242 0.21 +0.7
561,540 - GFF1242 0.21 +2.0
561,540 - GFF1242 0.21 +0.9
561,540 - GFF1242 0.21 +0.1
561,540 - GFF1242 0.21 -1.5
561,710 + GFF1242 0.32 +0.8
561,710 + GFF1242 0.32 -2.0
561,711 - GFF1242 0.32 -0.9
561,872 + GFF1242 0.43 -0.0
561,872 + GFF1242 0.43 -0.6
561,873 - GFF1242 0.43 -0.0
561,873 - GFF1242 0.43 -0.8
561,873 - GFF1242 0.43 -0.6
561,873 - GFF1242 0.43 +1.0
561,977 + GFF1242 0.50 -3.2
562,029 - GFF1242 0.53 +1.5
562,029 - GFF1242 0.53 -2.4
562,067 - GFF1242 0.56 -0.9
562,082 + GFF1242 0.57 -1.8
562,082 + GFF1242 0.57 -0.8
562,082 + GFF1242 0.57 +0.9
562,083 - GFF1242 0.57 -1.8
562,083 - GFF1242 0.57 +1.8
562,083 - GFF1242 0.57 -0.8
562,109 + GFF1242 0.58 +0.8
562,109 + GFF1242 0.58 -2.0
562,109 + GFF1242 0.58 +0.5
562,109 + GFF1242 0.58 -1.9
562,110 - GFF1242 0.58 -1.9
562,110 - GFF1242 0.58 -0.9
562,110 - GFF1242 0.58 +2.3
562,110 - GFF1242 0.58 -1.0
562,110 - GFF1242 0.58 -3.3
562,110 - GFF1242 0.58 -0.2
562,110 - GFF1242 0.58 -0.4

Or see this region's nucleotide sequence