Strain Fitness in Variovorax sp. SCN45 around GFF1206

Experiment: Community=arabino-guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1204 and GFF1205 are separated by 21 nucleotidesGFF1205 and GFF1206 overlap by 4 nucleotidesGFF1206 and GFF1207 are separated by 222 nucleotidesGFF1207 and GFF1208 are separated by 94 nucleotides GFF1204 - Phosphoadenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.8), at 522,448 to 523,068 GFF1204 GFF1205 - Oxidoreductase probably involved in sulfite reduction, at 523,090 to 523,485 GFF1205 GFF1206 - Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2), at 523,482 to 525,260 GFF1206 GFF1207 - no description, at 525,483 to 525,824 GFF1207 GFF1208 - diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s), at 525,919 to 526,611 GFF1208 Position (kb) 523 524 525 526Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 522.506 kb on + strandat 522.506 kb on + strandat 522.506 kb on + strandat 522.506 kb on + strandat 522.506 kb on + strandat 522.507 kb on - strandat 522.507 kb on - strandat 522.542 kb on + strand, within GFF1204at 522.543 kb on - strand, within GFF1204at 522.812 kb on + strand, within GFF1204at 522.812 kb on + strand, within GFF1204at 522.813 kb on - strand, within GFF1204at 522.813 kb on - strand, within GFF1204at 522.813 kb on - strand, within GFF1204at 522.813 kb on - strand, within GFF1204at 522.863 kb on + strand, within GFF1204at 522.864 kb on - strand, within GFF1204at 522.864 kb on - strand, within GFF1204at 522.864 kb on - strand, within GFF1204at 522.864 kb on - strand, within GFF1204at 522.881 kb on + strand, within GFF1204at 522.881 kb on + strand, within GFF1204at 522.881 kb on + strand, within GFF1204at 522.882 kb on - strand, within GFF1204at 523.076 kb on + strandat 523.076 kb on + strandat 523.077 kb on - strandat 523.139 kb on + strand, within GFF1205at 523.139 kb on + strand, within GFF1205at 523.139 kb on + strand, within GFF1205at 523.139 kb on + strand, within GFF1205at 523.139 kb on + strand, within GFF1205at 523.139 kb on + strand, within GFF1205at 523.140 kb on - strand, within GFF1205at 523.140 kb on - strand, within GFF1205at 523.723 kb on + strand, within GFF1206at 523.723 kb on + strand, within GFF1206at 523.724 kb on - strand, within GFF1206at 523.724 kb on - strand, within GFF1206at 523.856 kb on - strand, within GFF1206at 524.383 kb on + strand, within GFF1206at 524.383 kb on + strand, within GFF1206at 524.384 kb on - strand, within GFF1206at 524.384 kb on - strand, within GFF1206at 524.407 kb on + strand, within GFF1206at 524.407 kb on + strand, within GFF1206at 524.407 kb on + strand, within GFF1206at 524.407 kb on + strand, within GFF1206at 524.408 kb on - strand, within GFF1206at 524.452 kb on + strand, within GFF1206at 524.452 kb on + strand, within GFF1206at 524.453 kb on - strand, within GFF1206at 524.453 kb on - strand, within GFF1206at 524.453 kb on - strand, within GFF1206at 524.453 kb on - strand, within GFF1206at 524.453 kb on - strand, within GFF1206at 524.453 kb on - strand, within GFF1206at 524.453 kb on - strand, within GFF1206at 524.453 kb on - strand, within GFF1206at 524.482 kb on + strand, within GFF1206at 524.482 kb on + strand, within GFF1206at 524.482 kb on + strand, within GFF1206at 524.483 kb on - strand, within GFF1206at 524.506 kb on + strand, within GFF1206at 524.506 kb on + strand, within GFF1206at 524.507 kb on - strand, within GFF1206at 524.758 kb on + strand, within GFF1206at 524.758 kb on + strand, within GFF1206at 524.947 kb on + strand, within GFF1206at 524.947 kb on + strand, within GFF1206at 524.948 kb on - strand, within GFF1206at 524.948 kb on - strand, within GFF1206at 525.005 kb on - strand, within GFF1206at 525.005 kb on - strand, within GFF1206at 525.113 kb on - strandat 525.124 kb on + strandat 525.124 kb on + strandat 525.124 kb on + strandat 525.124 kb on + strandat 525.124 kb on + strandat 525.124 kb on + strandat 525.124 kb on + strandat 525.124 kb on + strandat 525.125 kb on - strandat 525.125 kb on - strandat 525.125 kb on - strandat 525.250 kb on + strandat 525.250 kb on + strandat 525.250 kb on + strandat 525.250 kb on + strandat 525.251 kb on - strandat 525.256 kb on + strandat 525.256 kb on + strandat 525.256 kb on + strandat 525.256 kb on + strandat 525.256 kb on + strandat 525.257 kb on - strandat 525.257 kb on - strandat 525.257 kb on - strandat 525.257 kb on - strandat 525.257 kb on - strandat 525.296 kb on + strandat 525.296 kb on + strandat 525.296 kb on + strandat 525.296 kb on + strandat 525.296 kb on + strandat 525.297 kb on - strandat 525.297 kb on - strandat 525.297 kb on - strandat 525.297 kb on - strandat 525.357 kb on - strandat 525.383 kb on + strandat 525.383 kb on + strandat 525.389 kb on + strandat 525.389 kb on + strandat 525.390 kb on - strandat 525.390 kb on - strandat 525.431 kb on + strandat 525.432 kb on - strandat 525.432 kb on - strandat 525.432 kb on - strandat 525.457 kb on + strandat 525.457 kb on + strandat 525.457 kb on + strandat 525.458 kb on - strandat 525.713 kb on + strand, within GFF1207at 525.715 kb on + strand, within GFF1207at 525.715 kb on + strand, within GFF1207at 525.715 kb on + strand, within GFF1207at 525.716 kb on - strand, within GFF1207at 525.716 kb on - strand, within GFF1207at 525.716 kb on - strand, within GFF1207at 525.716 kb on - strand, within GFF1207at 525.778 kb on + strand, within GFF1207at 525.778 kb on + strand, within GFF1207at 525.778 kb on + strand, within GFF1207at 525.778 kb on + strand, within GFF1207at 525.778 kb on + strand, within GFF1207at 525.778 kb on + strand, within GFF1207at 525.779 kb on + strand, within GFF1207at 525.779 kb on - strand, within GFF1207at 525.779 kb on - strand, within GFF1207at 525.779 kb on - strand, within GFF1207at 525.779 kb on - strand, within GFF1207at 525.920 kb on + strandat 525.921 kb on - strandat 526.055 kb on + strand, within GFF1208at 526.055 kb on + strand, within GFF1208at 526.055 kb on + strand, within GFF1208at 526.055 kb on + strand, within GFF1208at 526.056 kb on - strand, within GFF1208at 526.056 kb on - strand, within GFF1208at 526.064 kb on + strand, within GFF1208at 526.064 kb on + strand, within GFF1208at 526.064 kb on + strand, within GFF1208at 526.065 kb on - strand, within GFF1208at 526.065 kb on - strand, within GFF1208

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4
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522,506 + -0.5
522,506 + -4.8
522,506 + -1.0
522,506 + -3.8
522,506 + -3.0
522,507 - -4.1
522,507 - -1.8
522,542 + GFF1204 0.15 -4.4
522,543 - GFF1204 0.15 -3.2
522,812 + GFF1204 0.59 -3.2
522,812 + GFF1204 0.59 -3.3
522,813 - GFF1204 0.59 -0.8
522,813 - GFF1204 0.59 -0.8
522,813 - GFF1204 0.59 -5.4
522,813 - GFF1204 0.59 -2.4
522,863 + GFF1204 0.67 -2.8
522,864 - GFF1204 0.67 -5.2
522,864 - GFF1204 0.67 -2.5
522,864 - GFF1204 0.67 -0.8
522,864 - GFF1204 0.67 -3.5
522,881 + GFF1204 0.70 -1.0
522,881 + GFF1204 0.70 -2.1
522,881 + GFF1204 0.70 -1.6
522,882 - GFF1204 0.70 -5.3
523,076 + -2.3
523,076 + -3.8
523,077 - -1.9
523,139 + GFF1205 0.12 -2.3
523,139 + GFF1205 0.12 -3.1
523,139 + GFF1205 0.12 -2.3
523,139 + GFF1205 0.12 -1.8
523,139 + GFF1205 0.12 -5.0
523,139 + GFF1205 0.12 -3.2
523,140 - GFF1205 0.13 -4.1
523,140 - GFF1205 0.13 -2.2
523,723 + GFF1206 0.14 -0.8
523,723 + GFF1206 0.14 -2.8
523,724 - GFF1206 0.14 -2.4
523,724 - GFF1206 0.14 +1.4
523,856 - GFF1206 0.21 -0.0
524,383 + GFF1206 0.51 -2.4
524,383 + GFF1206 0.51 -1.4
524,384 - GFF1206 0.51 -2.8
524,384 - GFF1206 0.51 -2.6
524,407 + GFF1206 0.52 -1.8
524,407 + GFF1206 0.52 -1.3
524,407 + GFF1206 0.52 -1.9
524,407 + GFF1206 0.52 -1.0
524,408 - GFF1206 0.52 -2.1
524,452 + GFF1206 0.55 -1.8
524,452 + GFF1206 0.55 -1.6
524,453 - GFF1206 0.55 -1.3
524,453 - GFF1206 0.55 -2.4
524,453 - GFF1206 0.55 -3.1
524,453 - GFF1206 0.55 -4.9
524,453 - GFF1206 0.55 -3.0
524,453 - GFF1206 0.55 -1.4
524,453 - GFF1206 0.55 -1.0
524,453 - GFF1206 0.55 -2.0
524,482 + GFF1206 0.56 -2.7
524,482 + GFF1206 0.56 -3.6
524,482 + GFF1206 0.56 -3.2
524,483 - GFF1206 0.56 -0.8
524,506 + GFF1206 0.58 -0.8
524,506 + GFF1206 0.58 -1.0
524,507 - GFF1206 0.58 -0.8
524,758 + GFF1206 0.72 -1.3
524,758 + GFF1206 0.72 -4.1
524,947 + GFF1206 0.82 -3.3
524,947 + GFF1206 0.82 -2.8
524,948 - GFF1206 0.82 -4.7
524,948 - GFF1206 0.82 +0.6
525,005 - GFF1206 0.86 -3.8
525,005 - GFF1206 0.86 -3.1
525,113 - -1.3
525,124 + -4.1
525,124 + -1.3
525,124 + -2.5
525,124 + -3.3
525,124 + -2.4
525,124 + -1.6
525,124 + -2.3
525,124 + -0.0
525,125 - -4.7
525,125 - -2.8
525,125 - -3.1
525,250 + -4.1
525,250 + -3.0
525,250 + -1.4
525,250 + -2.0
525,251 - +1.6
525,256 + -4.1
525,256 + -3.8
525,256 + -2.0
525,256 + -1.9
525,256 + -3.0
525,257 - -4.1
525,257 - -2.6
525,257 - -2.4
525,257 - -3.8
525,257 - -2.3
525,296 + -2.9
525,296 + -3.9
525,296 + -1.8
525,296 + -3.9
525,296 + -3.6
525,297 - +2.9
525,297 - -1.6
525,297 - -2.1
525,297 - -0.0
525,357 - -1.0
525,383 + -4.0
525,383 + -1.8
525,389 + -0.0
525,389 + -1.0
525,390 - -0.2
525,390 - +0.3
525,431 + +0.2
525,432 - -3.9
525,432 - -1.6
525,432 - +0.6
525,457 + +1.8
525,457 + +0.6
525,457 + -0.0
525,458 - -1.0
525,713 + GFF1207 0.67 +0.6
525,715 + GFF1207 0.68 -2.7
525,715 + GFF1207 0.68 +1.7
525,715 + GFF1207 0.68 -0.8
525,716 - GFF1207 0.68 +0.6
525,716 - GFF1207 0.68 +0.7
525,716 - GFF1207 0.68 -0.4
525,716 - GFF1207 0.68 -2.9
525,778 + GFF1207 0.86 -0.0
525,778 + GFF1207 0.86 -1.0
525,778 + GFF1207 0.86 +1.0
525,778 + GFF1207 0.86 -1.0
525,778 + GFF1207 0.86 -2.4
525,778 + GFF1207 0.86 +0.9
525,779 + GFF1207 0.87 +0.4
525,779 - GFF1207 0.87 +0.6
525,779 - GFF1207 0.87 +0.6
525,779 - GFF1207 0.87 +0.6
525,779 - GFF1207 0.87 +1.4
525,920 + -2.9
525,921 - -1.3
526,055 + GFF1208 0.20 -1.3
526,055 + GFF1208 0.20 -3.8
526,055 + GFF1208 0.20 -0.8
526,055 + GFF1208 0.20 -1.3
526,056 - GFF1208 0.20 -1.1
526,056 - GFF1208 0.20 -3.9
526,064 + GFF1208 0.21 -1.3
526,064 + GFF1208 0.21 +1.4
526,064 + GFF1208 0.21 -1.3
526,065 - GFF1208 0.21 -0.8
526,065 - GFF1208 0.21 -1.1

Or see this region's nucleotide sequence