Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1203 and GFF1204 are separated by 47 nucleotides GFF1204 and GFF1205 are separated by 21 nucleotides GFF1205 and GFF1206 overlap by 4 nucleotides
GFF1203 - Sulfate adenylyltransferase subunit 2 (EC 2.7.7.4), at 521,459 to 522,400
GFF1203
GFF1204 - Phosphoadenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.8), at 522,448 to 523,068
GFF1204
GFF1205 - Oxidoreductase probably involved in sulfite reduction, at 523,090 to 523,485
GFF1205
GFF1206 - Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2), at 523,482 to 525,260
GFF1206
Position (kb) 523
524 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 522.141 kb on + strand, within GFF1203 at 522.506 kb on + strand at 522.506 kb on + strand at 522.506 kb on + strand at 522.506 kb on + strand at 522.506 kb on + strand at 522.507 kb on - strand at 522.507 kb on - strand at 522.542 kb on + strand, within GFF1204 at 522.543 kb on - strand, within GFF1204 at 522.812 kb on + strand, within GFF1204 at 522.812 kb on + strand, within GFF1204 at 522.813 kb on - strand, within GFF1204 at 522.813 kb on - strand, within GFF1204 at 522.813 kb on - strand, within GFF1204 at 522.813 kb on - strand, within GFF1204 at 522.863 kb on + strand, within GFF1204 at 522.864 kb on - strand, within GFF1204 at 522.864 kb on - strand, within GFF1204 at 522.864 kb on - strand, within GFF1204 at 522.864 kb on - strand, within GFF1204 at 522.881 kb on + strand, within GFF1204 at 522.881 kb on + strand, within GFF1204 at 522.881 kb on + strand, within GFF1204 at 522.882 kb on - strand, within GFF1204 at 523.076 kb on + strand at 523.076 kb on + strand at 523.077 kb on - strand at 523.139 kb on + strand, within GFF1205 at 523.139 kb on + strand, within GFF1205 at 523.139 kb on + strand, within GFF1205 at 523.139 kb on + strand, within GFF1205 at 523.139 kb on + strand, within GFF1205 at 523.139 kb on + strand, within GFF1205 at 523.140 kb on - strand, within GFF1205 at 523.140 kb on - strand, within GFF1205 at 523.723 kb on + strand, within GFF1206 at 523.723 kb on + strand, within GFF1206 at 523.724 kb on - strand, within GFF1206 at 523.724 kb on - strand, within GFF1206 at 523.856 kb on - strand, within GFF1206 at 524.383 kb on + strand, within GFF1206 at 524.383 kb on + strand, within GFF1206 at 524.384 kb on - strand, within GFF1206 at 524.384 kb on - strand, within GFF1206 at 524.407 kb on + strand, within GFF1206 at 524.407 kb on + strand, within GFF1206 at 524.407 kb on + strand, within GFF1206 at 524.407 kb on + strand, within GFF1206 at 524.408 kb on - strand, within GFF1206 at 524.452 kb on + strand, within GFF1206 at 524.452 kb on + strand, within GFF1206 at 524.453 kb on - strand, within GFF1206 at 524.453 kb on - strand, within GFF1206 at 524.453 kb on - strand, within GFF1206 at 524.453 kb on - strand, within GFF1206 at 524.453 kb on - strand, within GFF1206 at 524.453 kb on - strand, within GFF1206 at 524.453 kb on - strand, within GFF1206 at 524.453 kb on - strand, within GFF1206 at 524.482 kb on + strand, within GFF1206 at 524.482 kb on + strand, within GFF1206 at 524.482 kb on + strand, within GFF1206 at 524.483 kb on - strand, within GFF1206
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 522,141 + GFF1203 0.72 -3.7 522,506 + -0.5 522,506 + -4.8 522,506 + -1.0 522,506 + -3.8 522,506 + -3.0 522,507 - -4.1 522,507 - -1.8 522,542 + GFF1204 0.15 -4.4 522,543 - GFF1204 0.15 -3.2 522,812 + GFF1204 0.59 -3.2 522,812 + GFF1204 0.59 -3.3 522,813 - GFF1204 0.59 -0.8 522,813 - GFF1204 0.59 -0.8 522,813 - GFF1204 0.59 -5.4 522,813 - GFF1204 0.59 -2.4 522,863 + GFF1204 0.67 -2.8 522,864 - GFF1204 0.67 -5.2 522,864 - GFF1204 0.67 -2.5 522,864 - GFF1204 0.67 -0.8 522,864 - GFF1204 0.67 -3.5 522,881 + GFF1204 0.70 -1.0 522,881 + GFF1204 0.70 -2.1 522,881 + GFF1204 0.70 -1.6 522,882 - GFF1204 0.70 -5.3 523,076 + -2.3 523,076 + -3.8 523,077 - -1.9 523,139 + GFF1205 0.12 -2.3 523,139 + GFF1205 0.12 -3.1 523,139 + GFF1205 0.12 -2.3 523,139 + GFF1205 0.12 -1.8 523,139 + GFF1205 0.12 -5.0 523,139 + GFF1205 0.12 -3.2 523,140 - GFF1205 0.13 -4.1 523,140 - GFF1205 0.13 -2.2 523,723 + GFF1206 0.14 -0.8 523,723 + GFF1206 0.14 -2.8 523,724 - GFF1206 0.14 -2.4 523,724 - GFF1206 0.14 +1.4 523,856 - GFF1206 0.21 -0.0 524,383 + GFF1206 0.51 -2.4 524,383 + GFF1206 0.51 -1.4 524,384 - GFF1206 0.51 -2.8 524,384 - GFF1206 0.51 -2.6 524,407 + GFF1206 0.52 -1.8 524,407 + GFF1206 0.52 -1.3 524,407 + GFF1206 0.52 -1.9 524,407 + GFF1206 0.52 -1.0 524,408 - GFF1206 0.52 -2.1 524,452 + GFF1206 0.55 -1.8 524,452 + GFF1206 0.55 -1.6 524,453 - GFF1206 0.55 -1.3 524,453 - GFF1206 0.55 -2.4 524,453 - GFF1206 0.55 -3.1 524,453 - GFF1206 0.55 -4.9 524,453 - GFF1206 0.55 -3.0 524,453 - GFF1206 0.55 -1.4 524,453 - GFF1206 0.55 -1.0 524,453 - GFF1206 0.55 -2.0 524,482 + GFF1206 0.56 -2.7 524,482 + GFF1206 0.56 -3.6 524,482 + GFF1206 0.56 -3.2 524,483 - GFF1206 0.56 -0.8
Or see this region's nucleotide sequence