Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1202 and GFF1203 overlap by 1 nucleotides GFF1203 and GFF1204 are separated by 47 nucleotides GFF1204 and GFF1205 are separated by 21 nucleotides GFF1205 and GFF1206 overlap by 4 nucleotides
GFF1202 - Sulfate adenylyltransferase subunit 1 (EC 2.7.7.4), at 520,122 to 521,459
GFF1202
GFF1203 - Sulfate adenylyltransferase subunit 2 (EC 2.7.7.4), at 521,459 to 522,400
GFF1203
GFF1204 - Phosphoadenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.8), at 522,448 to 523,068
GFF1204
GFF1205 - Oxidoreductase probably involved in sulfite reduction, at 523,090 to 523,485
GFF1205
GFF1206 - Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2), at 523,482 to 525,260
GFF1206
Position (kb) 522
523
524 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 521.466 kb on + strand at 521.467 kb on - strand at 521.654 kb on + strand, within GFF1203 at 521.739 kb on + strand, within GFF1203 at 521.739 kb on + strand, within GFF1203 at 521.740 kb on - strand, within GFF1203 at 521.742 kb on + strand, within GFF1203 at 521.742 kb on + strand, within GFF1203 at 521.742 kb on + strand, within GFF1203 at 521.743 kb on - strand, within GFF1203 at 521.778 kb on + strand, within GFF1203 at 521.778 kb on + strand, within GFF1203 at 521.778 kb on + strand, within GFF1203 at 521.778 kb on + strand, within GFF1203 at 521.778 kb on + strand, within GFF1203 at 521.778 kb on + strand, within GFF1203 at 521.779 kb on - strand, within GFF1203 at 521.779 kb on - strand, within GFF1203 at 521.779 kb on - strand, within GFF1203 at 521.779 kb on - strand, within GFF1203 at 521.779 kb on - strand, within GFF1203 at 521.779 kb on - strand, within GFF1203 at 521.779 kb on - strand, within GFF1203 at 521.779 kb on - strand, within GFF1203 at 521.779 kb on - strand, within GFF1203 at 522.141 kb on + strand, within GFF1203 at 522.506 kb on + strand at 522.506 kb on + strand at 522.506 kb on + strand at 522.506 kb on + strand at 522.506 kb on + strand at 522.507 kb on - strand at 522.507 kb on - strand at 522.542 kb on + strand, within GFF1204 at 522.543 kb on - strand, within GFF1204 at 522.812 kb on + strand, within GFF1204 at 522.812 kb on + strand, within GFF1204 at 522.813 kb on - strand, within GFF1204 at 522.813 kb on - strand, within GFF1204 at 522.813 kb on - strand, within GFF1204 at 522.813 kb on - strand, within GFF1204 at 522.863 kb on + strand, within GFF1204 at 522.864 kb on - strand, within GFF1204 at 522.864 kb on - strand, within GFF1204 at 522.864 kb on - strand, within GFF1204 at 522.864 kb on - strand, within GFF1204 at 522.881 kb on + strand, within GFF1204 at 522.881 kb on + strand, within GFF1204 at 522.881 kb on + strand, within GFF1204 at 522.882 kb on - strand, within GFF1204 at 523.076 kb on + strand at 523.076 kb on + strand at 523.077 kb on - strand at 523.139 kb on + strand, within GFF1205 at 523.139 kb on + strand, within GFF1205 at 523.139 kb on + strand, within GFF1205 at 523.139 kb on + strand, within GFF1205 at 523.139 kb on + strand, within GFF1205 at 523.139 kb on + strand, within GFF1205 at 523.140 kb on - strand, within GFF1205 at 523.140 kb on - strand, within GFF1205 at 523.723 kb on + strand, within GFF1206 at 523.723 kb on + strand, within GFF1206 at 523.724 kb on - strand, within GFF1206 at 523.724 kb on - strand, within GFF1206 at 523.856 kb on - strand, within GFF1206
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 521,466 + -4.7 521,467 - -3.3 521,654 + GFF1203 0.21 -2.1 521,739 + GFF1203 0.30 -5.1 521,739 + GFF1203 0.30 -3.4 521,740 - GFF1203 0.30 -2.0 521,742 + GFF1203 0.30 -3.1 521,742 + GFF1203 0.30 -3.5 521,742 + GFF1203 0.30 -1.4 521,743 - GFF1203 0.30 -1.9 521,778 + GFF1203 0.34 -5.4 521,778 + GFF1203 0.34 -3.4 521,778 + GFF1203 0.34 -4.5 521,778 + GFF1203 0.34 -2.5 521,778 + GFF1203 0.34 -3.8 521,778 + GFF1203 0.34 -3.9 521,779 - GFF1203 0.34 -3.6 521,779 - GFF1203 0.34 -3.5 521,779 - GFF1203 0.34 -4.1 521,779 - GFF1203 0.34 -1.6 521,779 - GFF1203 0.34 -4.8 521,779 - GFF1203 0.34 -2.1 521,779 - GFF1203 0.34 -2.8 521,779 - GFF1203 0.34 -4.7 521,779 - GFF1203 0.34 -3.3 522,141 + GFF1203 0.72 -3.7 522,506 + -0.5 522,506 + -4.8 522,506 + -1.0 522,506 + -3.8 522,506 + -3.0 522,507 - -4.1 522,507 - -1.8 522,542 + GFF1204 0.15 -4.4 522,543 - GFF1204 0.15 -3.2 522,812 + GFF1204 0.59 -3.2 522,812 + GFF1204 0.59 -3.3 522,813 - GFF1204 0.59 -0.8 522,813 - GFF1204 0.59 -0.8 522,813 - GFF1204 0.59 -5.4 522,813 - GFF1204 0.59 -2.4 522,863 + GFF1204 0.67 -2.8 522,864 - GFF1204 0.67 -5.2 522,864 - GFF1204 0.67 -2.5 522,864 - GFF1204 0.67 -0.8 522,864 - GFF1204 0.67 -3.5 522,881 + GFF1204 0.70 -1.0 522,881 + GFF1204 0.70 -2.1 522,881 + GFF1204 0.70 -1.6 522,882 - GFF1204 0.70 -5.3 523,076 + -2.3 523,076 + -3.8 523,077 - -1.9 523,139 + GFF1205 0.12 -2.3 523,139 + GFF1205 0.12 -3.1 523,139 + GFF1205 0.12 -2.3 523,139 + GFF1205 0.12 -1.8 523,139 + GFF1205 0.12 -5.0 523,139 + GFF1205 0.12 -3.2 523,140 - GFF1205 0.13 -4.1 523,140 - GFF1205 0.13 -2.2 523,723 + GFF1206 0.14 -0.8 523,723 + GFF1206 0.14 -2.8 523,724 - GFF1206 0.14 -2.4 523,724 - GFF1206 0.14 +1.4 523,856 - GFF1206 0.21 -0.0
Or see this region's nucleotide sequence