Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1176 and GFF1177 are separated by 100 nucleotides GFF1177 and GFF1178 are separated by 23 nucleotides GFF1178 and GFF1179 are separated by 6 nucleotides
GFF1176 - Sensory histidine kinase QseC, at 492,051 to 493,379
GFF1176
GFF1177 - Serine protease, at 493,480 to 494,967
GFF1177
GFF1178 - hypothetical protein, at 494,991 to 495,332
GFF1178
GFF1179 - no description, at 495,339 to 497,222
GFF1179
Position (kb) 493
494
495 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 493.101 kb on + strand, within GFF1176 at 493.101 kb on + strand, within GFF1176 at 493.101 kb on + strand, within GFF1176 at 493.101 kb on + strand, within GFF1176 at 493.101 kb on + strand, within GFF1176 at 493.102 kb on - strand, within GFF1176 at 493.102 kb on - strand, within GFF1176 at 493.102 kb on - strand, within GFF1176 at 493.227 kb on + strand, within GFF1176 at 493.227 kb on + strand, within GFF1176 at 493.228 kb on - strand, within GFF1176 at 493.416 kb on + strand at 493.417 kb on - strand at 493.417 kb on - strand at 493.457 kb on + strand at 493.458 kb on - strand at 493.458 kb on - strand at 493.458 kb on - strand at 493.458 kb on - strand at 493.458 kb on - strand at 493.564 kb on + strand at 493.564 kb on + strand at 493.564 kb on + strand at 493.565 kb on - strand at 493.565 kb on - strand at 494.164 kb on + strand, within GFF1177 at 494.164 kb on + strand, within GFF1177 at 494.164 kb on + strand, within GFF1177 at 494.164 kb on + strand, within GFF1177 at 494.164 kb on + strand, within GFF1177 at 494.164 kb on + strand, within GFF1177 at 494.164 kb on + strand, within GFF1177 at 494.164 kb on + strand, within GFF1177 at 494.164 kb on + strand, within GFF1177 at 494.164 kb on + strand, within GFF1177 at 494.164 kb on + strand, within GFF1177 at 494.164 kb on + strand, within GFF1177 at 494.164 kb on + strand, within GFF1177 at 494.164 kb on + strand, within GFF1177 at 494.165 kb on - strand, within GFF1177 at 494.165 kb on - strand, within GFF1177 at 494.165 kb on - strand, within GFF1177 at 494.165 kb on - strand, within GFF1177 at 494.165 kb on - strand, within GFF1177 at 494.165 kb on - strand, within GFF1177 at 494.264 kb on + strand, within GFF1177 at 494.265 kb on - strand, within GFF1177 at 494.265 kb on - strand, within GFF1177 at 494.265 kb on - strand, within GFF1177 at 494.266 kb on + strand, within GFF1177 at 494.266 kb on + strand, within GFF1177 at 494.266 kb on + strand, within GFF1177 at 494.266 kb on + strand, within GFF1177 at 494.266 kb on + strand, within GFF1177 at 494.267 kb on - strand, within GFF1177 at 494.267 kb on - strand, within GFF1177 at 494.267 kb on - strand, within GFF1177 at 494.267 kb on - strand, within GFF1177 at 494.267 kb on - strand, within GFF1177 at 495.214 kb on + strand, within GFF1178 at 495.216 kb on + strand, within GFF1178 at 495.405 kb on + strand at 495.406 kb on - strand at 495.453 kb on + strand at 495.772 kb on + strand, within GFF1179 at 495.772 kb on + strand, within GFF1179 at 495.772 kb on + strand, within GFF1179 at 495.772 kb on + strand, within GFF1179 at 495.773 kb on - strand, within GFF1179 at 495.773 kb on - strand, within GFF1179 at 495.773 kb on - strand, within GFF1179 at 495.773 kb on - strand, within GFF1179
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 493,101 + GFF1176 0.79 +0.8 493,101 + GFF1176 0.79 -0.6 493,101 + GFF1176 0.79 -0.4 493,101 + GFF1176 0.79 +0.2 493,101 + GFF1176 0.79 +0.7 493,102 - GFF1176 0.79 -0.2 493,102 - GFF1176 0.79 +1.6 493,102 - GFF1176 0.79 -2.4 493,227 + GFF1176 0.88 -1.0 493,227 + GFF1176 0.88 -0.3 493,228 - GFF1176 0.89 +0.6 493,416 + +0.9 493,417 - +1.3 493,417 - -1.4 493,457 + -0.0 493,458 - +0.3 493,458 - +0.2 493,458 - +1.5 493,458 - -0.9 493,458 - -1.8 493,564 + -0.9 493,564 + -2.1 493,564 + -0.5 493,565 - -1.8 493,565 - -1.3 494,164 + GFF1177 0.46 -1.3 494,164 + GFF1177 0.46 -3.0 494,164 + GFF1177 0.46 -2.1 494,164 + GFF1177 0.46 +0.9 494,164 + GFF1177 0.46 +0.3 494,164 + GFF1177 0.46 +1.1 494,164 + GFF1177 0.46 +2.4 494,164 + GFF1177 0.46 +1.6 494,164 + GFF1177 0.46 +0.9 494,164 + GFF1177 0.46 -0.2 494,164 + GFF1177 0.46 +2.0 494,164 + GFF1177 0.46 +0.1 494,164 + GFF1177 0.46 +0.7 494,164 + GFF1177 0.46 -2.4 494,165 - GFF1177 0.46 +0.4 494,165 - GFF1177 0.46 +0.8 494,165 - GFF1177 0.46 -0.0 494,165 - GFF1177 0.46 -1.2 494,165 - GFF1177 0.46 +0.7 494,165 - GFF1177 0.46 -0.4 494,264 + GFF1177 0.53 -0.0 494,265 - GFF1177 0.53 -0.8 494,265 - GFF1177 0.53 +1.2 494,265 - GFF1177 0.53 -1.1 494,266 + GFF1177 0.53 -1.4 494,266 + GFF1177 0.53 -1.0 494,266 + GFF1177 0.53 -1.3 494,266 + GFF1177 0.53 -0.0 494,266 + GFF1177 0.53 +0.5 494,267 - GFF1177 0.53 -1.1 494,267 - GFF1177 0.53 +0.8 494,267 - GFF1177 0.53 +2.7 494,267 - GFF1177 0.53 -0.1 494,267 - GFF1177 0.53 -1.0 495,214 + GFF1178 0.65 -1.0 495,216 + GFF1178 0.66 +0.9 495,405 + -3.2 495,406 - +1.1 495,453 + -2.4 495,772 + GFF1179 0.23 -2.5 495,772 + GFF1179 0.23 -1.0 495,772 + GFF1179 0.23 +1.2 495,772 + GFF1179 0.23 -0.4 495,773 - GFF1179 0.23 -1.6 495,773 - GFF1179 0.23 +0.6 495,773 - GFF1179 0.23 -0.2 495,773 - GFF1179 0.23 -1.1
Or see this region's nucleotide sequence