Strain Fitness in Variovorax sp. SCN45 around GFF1137

Experiment: Community=arabino-guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1135 and GFF1136 are separated by 235 nucleotidesGFF1136 and GFF1137 are separated by 4 nucleotidesGFF1137 and GFF1138 are separated by 129 nucleotidesGFF1138 and GFF1139 overlap by 4 nucleotides GFF1135 - hypothetical protein, at 451,598 to 451,828 GFF1135 GFF1136 - hypothetical protein, at 452,064 to 452,651 GFF1136 GFF1137 - FIG00348850: hypothetical protein, at 452,656 to 453,498 GFF1137 GFF1138 - Transcriptional regulator, AcrR family, at 453,628 to 454,257 GFF1138 GFF1139 - Domain of unknown function / Efflux ABC transporter, permease protein, at 454,254 to 455,408 GFF1139 Position (kb) 452 453 454Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 451.809 kb on + strandat 451.810 kb on - strandat 451.826 kb on + strandat 451.826 kb on + strandat 451.826 kb on + strandat 451.826 kb on + strandat 451.826 kb on + strandat 451.827 kb on - strandat 451.827 kb on - strandat 451.827 kb on - strandat 451.827 kb on - strandat 451.827 kb on - strandat 451.827 kb on - strandat 451.827 kb on - strandat 451.827 kb on - strandat 451.827 kb on - strandat 451.848 kb on + strandat 451.928 kb on - strandat 451.929 kb on + strandat 451.930 kb on - strandat 451.930 kb on - strandat 451.930 kb on - strandat 451.930 kb on - strandat 451.930 kb on - strandat 451.930 kb on - strandat 451.945 kb on + strandat 451.945 kb on + strandat 451.945 kb on + strandat 451.946 kb on - strandat 451.954 kb on + strandat 451.954 kb on + strandat 451.954 kb on + strandat 451.955 kb on - strandat 451.955 kb on - strandat 451.955 kb on - strandat 451.964 kb on + strandat 451.964 kb on - strandat 451.965 kb on - strandat 451.977 kb on + strandat 452.040 kb on - strandat 452.069 kb on + strandat 452.069 kb on + strandat 452.069 kb on + strandat 452.070 kb on - strandat 452.070 kb on - strandat 452.070 kb on - strandat 452.070 kb on - strandat 452.197 kb on + strand, within GFF1136at 452.197 kb on + strand, within GFF1136at 452.388 kb on + strand, within GFF1136at 452.388 kb on + strand, within GFF1136at 452.388 kb on + strand, within GFF1136at 452.388 kb on + strand, within GFF1136at 452.388 kb on + strand, within GFF1136at 452.388 kb on + strand, within GFF1136at 452.388 kb on + strand, within GFF1136at 452.388 kb on + strand, within GFF1136at 452.389 kb on - strand, within GFF1136at 452.389 kb on - strand, within GFF1136at 452.389 kb on - strand, within GFF1136at 452.389 kb on - strand, within GFF1136at 452.389 kb on - strand, within GFF1136at 452.389 kb on - strand, within GFF1136at 452.389 kb on - strand, within GFF1136at 452.389 kb on - strand, within GFF1136at 452.399 kb on + strand, within GFF1136at 452.399 kb on + strand, within GFF1136at 452.399 kb on + strand, within GFF1136at 452.399 kb on + strand, within GFF1136at 452.399 kb on + strand, within GFF1136at 452.399 kb on + strand, within GFF1136at 452.400 kb on - strand, within GFF1136at 452.400 kb on - strand, within GFF1136at 452.400 kb on - strand, within GFF1136at 452.400 kb on - strand, within GFF1136at 452.451 kb on + strand, within GFF1136at 452.451 kb on + strand, within GFF1136at 452.451 kb on + strand, within GFF1136at 452.451 kb on + strand, within GFF1136at 452.451 kb on + strand, within GFF1136at 452.451 kb on + strand, within GFF1136at 452.451 kb on + strand, within GFF1136at 452.451 kb on + strand, within GFF1136at 452.451 kb on + strand, within GFF1136at 452.451 kb on + strand, within GFF1136at 452.451 kb on + strand, within GFF1136at 452.452 kb on - strand, within GFF1136at 452.452 kb on - strand, within GFF1136at 452.452 kb on - strand, within GFF1136at 452.452 kb on - strand, within GFF1136at 452.452 kb on - strand, within GFF1136at 452.452 kb on - strand, within GFF1136at 452.452 kb on - strand, within GFF1136at 452.452 kb on - strand, within GFF1136at 452.452 kb on - strand, within GFF1136at 452.452 kb on - strand, within GFF1136at 452.452 kb on - strand, within GFF1136at 452.452 kb on - strand, within GFF1136at 452.452 kb on - strand, within GFF1136at 452.452 kb on - strand, within GFF1136at 452.452 kb on - strand, within GFF1136at 452.452 kb on - strand, within GFF1136at 452.452 kb on - strand, within GFF1136at 452.699 kb on + strandat 452.699 kb on + strandat 452.699 kb on + strandat 452.699 kb on + strandat 452.699 kb on + strandat 452.699 kb on + strandat 452.699 kb on + strandat 452.699 kb on + strandat 452.700 kb on - strandat 452.700 kb on - strandat 452.700 kb on - strandat 452.700 kb on - strandat 452.700 kb on - strandat 452.700 kb on - strandat 452.700 kb on - strandat 452.700 kb on - strandat 452.761 kb on + strand, within GFF1137at 452.777 kb on + strand, within GFF1137at 452.777 kb on + strand, within GFF1137at 452.777 kb on + strand, within GFF1137at 452.777 kb on + strand, within GFF1137at 452.777 kb on + strand, within GFF1137at 452.777 kb on + strand, within GFF1137at 452.778 kb on - strand, within GFF1137at 452.778 kb on - strand, within GFF1137at 452.778 kb on - strand, within GFF1137at 452.984 kb on + strand, within GFF1137at 452.984 kb on + strand, within GFF1137at 452.984 kb on + strand, within GFF1137at 452.984 kb on + strand, within GFF1137at 452.984 kb on + strand, within GFF1137at 452.984 kb on + strand, within GFF1137at 452.984 kb on + strand, within GFF1137at 452.984 kb on + strand, within GFF1137at 452.984 kb on + strand, within GFF1137at 452.984 kb on + strand, within GFF1137at 452.984 kb on + strand, within GFF1137at 452.984 kb on + strand, within GFF1137at 452.984 kb on + strand, within GFF1137at 452.984 kb on + strand, within GFF1137at 452.984 kb on + strand, within GFF1137at 452.984 kb on + strand, within GFF1137at 452.984 kb on + strand, within GFF1137at 452.984 kb on + strand, within GFF1137at 452.984 kb on + strand, within GFF1137at 452.984 kb on + strand, within GFF1137at 452.984 kb on + strand, within GFF1137at 452.984 kb on + strand, within GFF1137at 452.984 kb on + strand, within GFF1137at 452.984 kb on + strand, within GFF1137at 452.985 kb on - strand, within GFF1137at 452.985 kb on - strand, within GFF1137at 452.985 kb on - strand, within GFF1137at 452.985 kb on - strand, within GFF1137at 452.985 kb on - strand, within GFF1137at 452.985 kb on - strand, within GFF1137at 452.985 kb on - strand, within GFF1137at 452.985 kb on - strand, within GFF1137at 452.985 kb on - strand, within GFF1137at 452.985 kb on - strand, within GFF1137at 452.985 kb on - strand, within GFF1137at 452.985 kb on - strand, within GFF1137at 452.985 kb on - strand, within GFF1137at 452.985 kb on - strand, within GFF1137at 452.985 kb on - strand, within GFF1137at 452.985 kb on - strand, within GFF1137at 452.985 kb on - strand, within GFF1137at 453.305 kb on + strand, within GFF1137at 453.503 kb on + strandat 453.518 kb on + strandat 453.518 kb on + strandat 453.546 kb on + strandat 453.547 kb on - strandat 453.547 kb on - strandat 453.547 kb on - strandat 453.547 kb on - strandat 453.547 kb on - strandat 453.547 kb on - strandat 453.600 kb on + strandat 453.611 kb on - strandat 453.691 kb on + strand, within GFF1138at 453.691 kb on + strand, within GFF1138at 453.691 kb on + strand, within GFF1138at 453.691 kb on + strand, within GFF1138at 453.691 kb on + strand, within GFF1138at 453.691 kb on + strand, within GFF1138at 453.691 kb on + strand, within GFF1138at 453.691 kb on + strand, within GFF1138at 453.691 kb on + strand, within GFF1138at 453.691 kb on + strand, within GFF1138at 453.691 kb on + strand, within GFF1138at 453.691 kb on + strand, within GFF1138at 453.691 kb on + strand, within GFF1138at 453.692 kb on - strand, within GFF1138at 453.692 kb on - strand, within GFF1138at 453.692 kb on - strand, within GFF1138at 453.692 kb on - strand, within GFF1138at 453.692 kb on - strand, within GFF1138at 453.692 kb on - strand, within GFF1138at 453.692 kb on - strand, within GFF1138at 453.692 kb on - strand, within GFF1138at 453.692 kb on - strand, within GFF1138at 453.692 kb on - strand, within GFF1138at 453.692 kb on - strand, within GFF1138at 453.692 kb on - strand, within GFF1138at 453.692 kb on - strand, within GFF1138at 453.692 kb on - strand, within GFF1138at 453.692 kb on - strand, within GFF1138at 453.692 kb on - strand, within GFF1138at 453.692 kb on - strand, within GFF1138at 453.692 kb on - strand, within GFF1138at 453.692 kb on - strand, within GFF1138at 453.692 kb on - strand, within GFF1138at 453.692 kb on - strand, within GFF1138at 453.740 kb on - strand, within GFF1138at 453.740 kb on - strand, within GFF1138at 453.792 kb on + strand, within GFF1138at 453.792 kb on + strand, within GFF1138at 453.792 kb on + strand, within GFF1138at 453.799 kb on + strand, within GFF1138at 453.799 kb on + strand, within GFF1138at 453.799 kb on + strand, within GFF1138at 453.799 kb on + strand, within GFF1138at 453.799 kb on + strand, within GFF1138at 453.799 kb on + strand, within GFF1138at 453.799 kb on + strand, within GFF1138at 453.799 kb on + strand, within GFF1138at 453.799 kb on + strand, within GFF1138at 453.799 kb on + strand, within GFF1138at 453.799 kb on + strand, within GFF1138at 453.799 kb on + strand, within GFF1138at 453.799 kb on + strand, within GFF1138at 453.799 kb on + strand, within GFF1138at 453.800 kb on - strand, within GFF1138at 453.800 kb on - strand, within GFF1138at 453.800 kb on - strand, within GFF1138at 453.800 kb on - strand, within GFF1138at 453.800 kb on - strand, within GFF1138at 453.800 kb on - strand, within GFF1138at 453.800 kb on - strand, within GFF1138at 453.800 kb on - strand, within GFF1138at 453.800 kb on - strand, within GFF1138at 453.800 kb on - strand, within GFF1138at 453.800 kb on - strand, within GFF1138at 453.800 kb on - strand, within GFF1138at 453.800 kb on - strand, within GFF1138at 453.800 kb on - strand, within GFF1138at 453.800 kb on - strand, within GFF1138at 453.841 kb on + strand, within GFF1138at 453.841 kb on + strand, within GFF1138at 453.842 kb on - strand, within GFF1138at 453.842 kb on - strand, within GFF1138at 453.842 kb on - strand, within GFF1138at 453.937 kb on + strand, within GFF1138at 453.937 kb on + strand, within GFF1138at 453.938 kb on - strand, within GFF1138at 453.938 kb on - strand, within GFF1138at 453.946 kb on + strand, within GFF1138at 453.946 kb on + strand, within GFF1138at 453.947 kb on - strand, within GFF1138at 453.947 kb on - strand, within GFF1138at 453.947 kb on - strand, within GFF1138at 454.055 kb on - strand, within GFF1138at 454.256 kb on - strandat 454.274 kb on + strandat 454.348 kb on + strandat 454.348 kb on + strandat 454.348 kb on + strandat 454.348 kb on + strandat 454.348 kb on + strandat 454.348 kb on + strandat 454.348 kb on + strandat 454.348 kb on + strandat 454.349 kb on - strandat 454.349 kb on - strandat 454.349 kb on - strandat 454.349 kb on - strandat 454.349 kb on - strandat 454.349 kb on - strandat 454.349 kb on - strandat 454.349 kb on - strandat 454.349 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4
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451,809 + -0.2
451,810 - -3.4
451,826 + +0.9
451,826 + -2.2
451,826 + +1.1
451,826 + +1.4
451,826 + +1.2
451,827 - -2.0
451,827 - +0.5
451,827 - -0.5
451,827 - -0.2
451,827 - +1.6
451,827 - -0.8
451,827 - -1.0
451,827 - -3.0
451,827 - +1.2
451,848 + +0.6
451,928 - -0.0
451,929 + +1.1
451,930 - -0.4
451,930 - -0.5
451,930 - -2.0
451,930 - +0.8
451,930 - +3.2
451,930 - -0.6
451,945 + +0.3
451,945 + +0.3
451,945 + -2.0
451,946 - -1.4
451,954 + -1.0
451,954 + -1.6
451,954 + -0.2
451,955 - -0.0
451,955 - +0.3
451,955 - -2.0
451,964 + -0.1
451,964 - -2.1
451,965 - +1.8
451,977 + -0.7
452,040 - +0.6
452,069 + +0.6
452,069 + +0.3
452,069 + -1.2
452,070 - +0.6
452,070 - -0.0
452,070 - +0.7
452,070 - -1.4
452,197 + GFF1136 0.23 -1.7
452,197 + GFF1136 0.23 -2.7
452,388 + GFF1136 0.55 -1.0
452,388 + GFF1136 0.55 +2.2
452,388 + GFF1136 0.55 +0.5
452,388 + GFF1136 0.55 -2.6
452,388 + GFF1136 0.55 +3.2
452,388 + GFF1136 0.55 +0.4
452,388 + GFF1136 0.55 -3.7
452,388 + GFF1136 0.55 -1.8
452,389 - GFF1136 0.55 -0.0
452,389 - GFF1136 0.55 +0.1
452,389 - GFF1136 0.55 -3.1
452,389 - GFF1136 0.55 +1.1
452,389 - GFF1136 0.55 -0.9
452,389 - GFF1136 0.55 -0.6
452,389 - GFF1136 0.55 +1.4
452,389 - GFF1136 0.55 -4.1
452,399 + GFF1136 0.57 +0.1
452,399 + GFF1136 0.57 -0.7
452,399 + GFF1136 0.57 +0.4
452,399 + GFF1136 0.57 +0.0
452,399 + GFF1136 0.57 -0.5
452,399 + GFF1136 0.57 -1.2
452,400 - GFF1136 0.57 -1.1
452,400 - GFF1136 0.57 -1.1
452,400 - GFF1136 0.57 -2.6
452,400 - GFF1136 0.57 -1.2
452,451 + GFF1136 0.66 -2.2
452,451 + GFF1136 0.66 -1.2
452,451 + GFF1136 0.66 -1.1
452,451 + GFF1136 0.66 -0.2
452,451 + GFF1136 0.66 -2.4
452,451 + GFF1136 0.66 -2.1
452,451 + GFF1136 0.66 -2.1
452,451 + GFF1136 0.66 -0.2
452,451 + GFF1136 0.66 -2.9
452,451 + GFF1136 0.66 +0.7
452,451 + GFF1136 0.66 -0.2
452,452 - GFF1136 0.66 +0.5
452,452 - GFF1136 0.66 +0.1
452,452 - GFF1136 0.66 -2.1
452,452 - GFF1136 0.66 -0.1
452,452 - GFF1136 0.66 -0.3
452,452 - GFF1136 0.66 +0.6
452,452 - GFF1136 0.66 -0.7
452,452 - GFF1136 0.66 -0.7
452,452 - GFF1136 0.66 -0.6
452,452 - GFF1136 0.66 -0.8
452,452 - GFF1136 0.66 -0.2
452,452 - GFF1136 0.66 -0.4
452,452 - GFF1136 0.66 -2.6
452,452 - GFF1136 0.66 -0.9
452,452 - GFF1136 0.66 +0.7
452,452 - GFF1136 0.66 +1.0
452,452 - GFF1136 0.66 +0.8
452,699 + -1.2
452,699 + -0.7
452,699 + -0.7
452,699 + -2.1
452,699 + -3.2
452,699 + -0.9
452,699 + +0.1
452,699 + -0.2
452,700 - -1.8
452,700 - -0.2
452,700 - +0.2
452,700 - -0.8
452,700 - -1.4
452,700 - -1.7
452,700 - -1.7
452,700 - -1.0
452,761 + GFF1137 0.12 -1.3
452,777 + GFF1137 0.14 -0.7
452,777 + GFF1137 0.14 -2.7
452,777 + GFF1137 0.14 -1.4
452,777 + GFF1137 0.14 +0.5
452,777 + GFF1137 0.14 -0.4
452,777 + GFF1137 0.14 -1.2
452,778 - GFF1137 0.14 +0.4
452,778 - GFF1137 0.14 -0.7
452,778 - GFF1137 0.14 +1.8
452,984 + GFF1137 0.39 -1.9
452,984 + GFF1137 0.39 -1.7
452,984 + GFF1137 0.39 -0.7
452,984 + GFF1137 0.39 +0.6
452,984 + GFF1137 0.39 +3.0
452,984 + GFF1137 0.39 -0.2
452,984 + GFF1137 0.39 -0.0
452,984 + GFF1137 0.39 -2.4
452,984 + GFF1137 0.39 +0.6
452,984 + GFF1137 0.39 -1.0
452,984 + GFF1137 0.39 +0.3
452,984 + GFF1137 0.39 -1.2
452,984 + GFF1137 0.39 -0.0
452,984 + GFF1137 0.39 -0.8
452,984 + GFF1137 0.39 +0.6
452,984 + GFF1137 0.39 +1.6
452,984 + GFF1137 0.39 +0.4
452,984 + GFF1137 0.39 -0.2
452,984 + GFF1137 0.39 -0.6
452,984 + GFF1137 0.39 +1.4
452,984 + GFF1137 0.39 -0.1
452,984 + GFF1137 0.39 -0.7
452,984 + GFF1137 0.39 -1.0
452,984 + GFF1137 0.39 -2.0
452,985 - GFF1137 0.39 -0.0
452,985 - GFF1137 0.39 -2.4
452,985 - GFF1137 0.39 -2.1
452,985 - GFF1137 0.39 -1.6
452,985 - GFF1137 0.39 -2.2
452,985 - GFF1137 0.39 -0.1
452,985 - GFF1137 0.39 -1.5
452,985 - GFF1137 0.39 -2.1
452,985 - GFF1137 0.39 -0.7
452,985 - GFF1137 0.39 -0.7
452,985 - GFF1137 0.39 -1.6
452,985 - GFF1137 0.39 +0.6
452,985 - GFF1137 0.39 +0.2
452,985 - GFF1137 0.39 -3.5
452,985 - GFF1137 0.39 +1.1
452,985 - GFF1137 0.39 -2.2
452,985 - GFF1137 0.39 -1.9
453,305 + GFF1137 0.77 -2.1
453,503 + +0.1
453,518 + -1.3
453,518 + -0.8
453,546 + -1.0
453,547 - -1.9
453,547 - +0.5
453,547 - -0.6
453,547 - -0.0
453,547 - -0.3
453,547 - +1.6
453,600 + -2.8
453,611 - -1.6
453,691 + GFF1138 0.10 -0.8
453,691 + GFF1138 0.10 +1.3
453,691 + GFF1138 0.10 -0.9
453,691 + GFF1138 0.10 +0.4
453,691 + GFF1138 0.10 -0.8
453,691 + GFF1138 0.10 +1.9
453,691 + GFF1138 0.10 -0.0
453,691 + GFF1138 0.10 -0.0
453,691 + GFF1138 0.10 -1.5
453,691 + GFF1138 0.10 +1.6
453,691 + GFF1138 0.10 +1.4
453,691 + GFF1138 0.10 -2.8
453,691 + GFF1138 0.10 -3.3
453,692 - GFF1138 0.10 -2.8
453,692 - GFF1138 0.10 -0.2
453,692 - GFF1138 0.10 -2.6
453,692 - GFF1138 0.10 +0.0
453,692 - GFF1138 0.10 -0.0
453,692 - GFF1138 0.10 -2.6
453,692 - GFF1138 0.10 +0.2
453,692 - GFF1138 0.10 -0.3
453,692 - GFF1138 0.10 -2.4
453,692 - GFF1138 0.10 -3.1
453,692 - GFF1138 0.10 -1.3
453,692 - GFF1138 0.10 -3.5
453,692 - GFF1138 0.10 +0.2
453,692 - GFF1138 0.10 +2.1
453,692 - GFF1138 0.10 -1.2
453,692 - GFF1138 0.10 -1.0
453,692 - GFF1138 0.10 -0.4
453,692 - GFF1138 0.10 +2.8
453,692 - GFF1138 0.10 +1.6
453,692 - GFF1138 0.10 +0.1
453,692 - GFF1138 0.10 -2.8
453,740 - GFF1138 0.18 -1.4
453,740 - GFF1138 0.18 -2.5
453,792 + GFF1138 0.26 -1.2
453,792 + GFF1138 0.26 -1.4
453,792 + GFF1138 0.26 +1.2
453,799 + GFF1138 0.27 +2.7
453,799 + GFF1138 0.27 -0.0
453,799 + GFF1138 0.27 -1.2
453,799 + GFF1138 0.27 +0.9
453,799 + GFF1138 0.27 -0.2
453,799 + GFF1138 0.27 -0.0
453,799 + GFF1138 0.27 -1.6
453,799 + GFF1138 0.27 -1.0
453,799 + GFF1138 0.27 -0.6
453,799 + GFF1138 0.27 -1.0
453,799 + GFF1138 0.27 +0.8
453,799 + GFF1138 0.27 +2.2
453,799 + GFF1138 0.27 -0.9
453,799 + GFF1138 0.27 -2.6
453,800 - GFF1138 0.27 -1.8
453,800 - GFF1138 0.27 +1.5
453,800 - GFF1138 0.27 +0.9
453,800 - GFF1138 0.27 +0.8
453,800 - GFF1138 0.27 +0.5
453,800 - GFF1138 0.27 -1.4
453,800 - GFF1138 0.27 -0.1
453,800 - GFF1138 0.27 +1.3
453,800 - GFF1138 0.27 -0.7
453,800 - GFF1138 0.27 +0.6
453,800 - GFF1138 0.27 -1.2
453,800 - GFF1138 0.27 -2.4
453,800 - GFF1138 0.27 -0.0
453,800 - GFF1138 0.27 +1.9
453,800 - GFF1138 0.27 +0.4
453,841 + GFF1138 0.34 +0.6
453,841 + GFF1138 0.34 -1.0
453,842 - GFF1138 0.34 -1.5
453,842 - GFF1138 0.34 +1.1
453,842 - GFF1138 0.34 -2.7
453,937 + GFF1138 0.49 -2.3
453,937 + GFF1138 0.49 -0.2
453,938 - GFF1138 0.49 -3.0
453,938 - GFF1138 0.49 -1.9
453,946 + GFF1138 0.50 +1.1
453,946 + GFF1138 0.50 -2.9
453,947 - GFF1138 0.51 +2.6
453,947 - GFF1138 0.51 +1.2
453,947 - GFF1138 0.51 +0.1
454,055 - GFF1138 0.68 +2.6
454,256 - +0.6
454,274 + +2.7
454,348 + -0.5
454,348 + +0.6
454,348 + -0.1
454,348 + +2.0
454,348 + +0.1
454,348 + -0.4
454,348 + -0.9
454,348 + -1.6
454,349 - -2.7
454,349 - +0.9
454,349 - -1.6
454,349 - -0.0
454,349 - -1.9
454,349 - -1.6
454,349 - +0.0
454,349 - +2.8
454,349 - -1.4

Or see this region's nucleotide sequence