Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1112 and GFF1113 are separated by 55 nucleotides GFF1113 and GFF1114 overlap by 1 nucleotides GFF1114 and GFF1115 are separated by 75 nucleotides
GFF1112 - Hydroxymethylpyrimidine ABC transporter, substrate-binding component, at 428,970 to 430,007
GFF1112
GFF1113 - ABC transporter, ATP-binding protein (cluster 1, maltose/g3p/polyamine/iron); ABC transporter, ATP-binding protein (cluster 10, nitrate/sulfonate/bicarbonate), at 430,063 to 430,878
GFF1113
GFF1114 - ABC transporter, permease protein (cluster 10, nitrate/sulfonate/bicarbonate), at 430,878 to 431,720
GFF1114
GFF1115 - Putative transmembrane protein, at 431,796 to 432,980
GFF1115
Position (kb) 430
431
432 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 429.960 kb on + strand at 429.960 kb on + strand at 429.960 kb on + strand at 429.960 kb on + strand at 429.960 kb on + strand at 429.961 kb on - strand at 429.961 kb on - strand at 430.135 kb on + strand at 430.135 kb on + strand at 430.135 kb on + strand at 430.315 kb on + strand, within GFF1113 at 430.316 kb on - strand, within GFF1113 at 430.316 kb on - strand, within GFF1113 at 430.316 kb on - strand, within GFF1113 at 430.316 kb on - strand, within GFF1113 at 430.849 kb on + strand at 430.849 kb on + strand at 430.850 kb on - strand at 430.850 kb on - strand at 431.106 kb on + strand, within GFF1114 at 431.106 kb on + strand, within GFF1114 at 431.106 kb on + strand, within GFF1114 at 431.106 kb on + strand, within GFF1114 at 431.106 kb on + strand, within GFF1114 at 431.106 kb on + strand, within GFF1114 at 431.106 kb on + strand, within GFF1114 at 431.106 kb on + strand, within GFF1114 at 431.107 kb on - strand, within GFF1114 at 431.107 kb on - strand, within GFF1114 at 431.107 kb on - strand, within GFF1114 at 431.229 kb on + strand, within GFF1114 at 431.229 kb on + strand, within GFF1114 at 431.229 kb on + strand, within GFF1114 at 431.230 kb on - strand, within GFF1114 at 431.230 kb on - strand, within GFF1114 at 431.230 kb on - strand, within GFF1114 at 431.230 kb on - strand, within GFF1114 at 431.361 kb on + strand, within GFF1114 at 431.361 kb on + strand, within GFF1114 at 431.362 kb on - strand, within GFF1114 at 431.448 kb on + strand, within GFF1114 at 431.448 kb on + strand, within GFF1114 at 431.448 kb on + strand, within GFF1114 at 431.449 kb on - strand, within GFF1114 at 431.449 kb on - strand, within GFF1114 at 431.449 kb on - strand, within GFF1114 at 431.533 kb on - strand, within GFF1114 at 431.533 kb on - strand, within GFF1114 at 431.559 kb on + strand, within GFF1114 at 431.718 kb on + strand at 431.718 kb on + strand at 431.718 kb on + strand at 431.718 kb on + strand at 431.719 kb on - strand at 431.719 kb on - strand at 431.719 kb on - strand at 431.790 kb on + strand at 431.887 kb on - strand at 431.916 kb on + strand, within GFF1115 at 431.916 kb on + strand, within GFF1115 at 431.917 kb on - strand, within GFF1115 at 431.917 kb on - strand, within GFF1115 at 431.994 kb on + strand, within GFF1115 at 431.995 kb on - strand, within GFF1115 at 431.995 kb on - strand, within GFF1115 at 431.995 kb on - strand, within GFF1115 at 431.995 kb on - strand, within GFF1115 at 431.995 kb on - strand, within GFF1115 at 432.324 kb on + strand, within GFF1115 at 432.325 kb on - strand, within GFF1115 at 432.325 kb on - strand, within GFF1115 at 432.558 kb on + strand, within GFF1115 at 432.558 kb on + strand, within GFF1115 at 432.558 kb on + strand, within GFF1115 at 432.559 kb on - strand, within GFF1115 at 432.559 kb on - strand, within GFF1115 at 432.559 kb on - strand, within GFF1115 at 432.639 kb on + strand, within GFF1115 at 432.639 kb on + strand, within GFF1115 at 432.639 kb on + strand, within GFF1115 at 432.639 kb on + strand, within GFF1115 at 432.640 kb on - strand, within GFF1115
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 429,960 + +1.6 429,960 + -1.2 429,960 + -2.9 429,960 + -1.2 429,960 + -2.7 429,961 - -1.6 429,961 - -0.5 430,135 + +1.6 430,135 + -2.7 430,135 + -1.0 430,315 + GFF1113 0.31 -1.4 430,316 - GFF1113 0.31 -1.9 430,316 - GFF1113 0.31 -1.7 430,316 - GFF1113 0.31 -2.3 430,316 - GFF1113 0.31 -0.7 430,849 + +2.0 430,849 + +0.5 430,850 - -1.0 430,850 - -3.4 431,106 + GFF1114 0.27 -2.5 431,106 + GFF1114 0.27 +1.4 431,106 + GFF1114 0.27 +0.2 431,106 + GFF1114 0.27 +1.4 431,106 + GFF1114 0.27 +0.0 431,106 + GFF1114 0.27 -0.3 431,106 + GFF1114 0.27 -0.4 431,106 + GFF1114 0.27 -0.5 431,107 - GFF1114 0.27 +0.9 431,107 - GFF1114 0.27 -0.7 431,107 - GFF1114 0.27 -0.4 431,229 + GFF1114 0.42 +0.0 431,229 + GFF1114 0.42 -3.0 431,229 + GFF1114 0.42 -2.2 431,230 - GFF1114 0.42 -3.0 431,230 - GFF1114 0.42 -0.3 431,230 - GFF1114 0.42 +0.3 431,230 - GFF1114 0.42 +0.6 431,361 + GFF1114 0.57 -1.9 431,361 + GFF1114 0.57 -0.4 431,362 - GFF1114 0.57 -3.3 431,448 + GFF1114 0.68 -1.8 431,448 + GFF1114 0.68 -2.7 431,448 + GFF1114 0.68 -1.7 431,449 - GFF1114 0.68 -2.3 431,449 - GFF1114 0.68 +0.2 431,449 - GFF1114 0.68 +0.6 431,533 - GFF1114 0.78 -2.8 431,533 - GFF1114 0.78 -3.5 431,559 + GFF1114 0.81 +2.0 431,718 + +0.8 431,718 + +0.7 431,718 + +0.9 431,718 + -0.6 431,719 - -1.2 431,719 - -1.9 431,719 - -0.6 431,790 + +1.5 431,887 - +0.6 431,916 + GFF1115 0.10 +0.8 431,916 + GFF1115 0.10 -1.4 431,917 - GFF1115 0.10 -0.8 431,917 - GFF1115 0.10 +0.0 431,994 + GFF1115 0.17 -1.4 431,995 - GFF1115 0.17 -3.0 431,995 - GFF1115 0.17 +0.7 431,995 - GFF1115 0.17 +4.4 431,995 - GFF1115 0.17 -1.9 431,995 - GFF1115 0.17 +0.8 432,324 + GFF1115 0.45 -2.7 432,325 - GFF1115 0.45 +1.7 432,325 - GFF1115 0.45 -1.6 432,558 + GFF1115 0.64 -2.5 432,558 + GFF1115 0.64 -0.2 432,558 + GFF1115 0.64 -2.3 432,559 - GFF1115 0.64 +0.5 432,559 - GFF1115 0.64 -0.7 432,559 - GFF1115 0.64 -1.2 432,639 + GFF1115 0.71 -0.4 432,639 + GFF1115 0.71 +0.3 432,639 + GFF1115 0.71 -0.3 432,639 + GFF1115 0.71 -0.6 432,640 - GFF1115 0.71 -0.7
Or see this region's nucleotide sequence