Strain Fitness in Variovorax sp. SCN45 around GFF1111

Experiment: Community=arabino-guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1109 and GFF1110 are separated by 7 nucleotidesGFF1110 and GFF1111 are separated by 27 nucleotidesGFF1111 and GFF1112 are separated by 137 nucleotides GFF1109 - Nucleoid-associated protein YaaK, at 427,482 to 427,814 GFF1109 GFF1110 - Recombination protein RecR, at 427,822 to 428,412 GFF1110 GFF1111 - probable membrane protein NMA1176, at 428,440 to 428,832 GFF1111 GFF1112 - Hydroxymethylpyrimidine ABC transporter, substrate-binding component, at 428,970 to 430,007 GFF1112 Position (kb) 428 429Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 427.440 kb on + strandat 427.440 kb on + strandat 427.440 kb on + strandat 427.441 kb on - strandat 427.812 kb on + strandat 428.131 kb on + strand, within GFF1110at 428.131 kb on + strand, within GFF1110at 428.132 kb on - strand, within GFF1110at 428.132 kb on - strand, within GFF1110at 428.132 kb on - strand, within GFF1110at 428.132 kb on - strand, within GFF1110at 428.132 kb on - strand, within GFF1110at 428.132 kb on - strand, within GFF1110at 428.132 kb on - strand, within GFF1110at 428.365 kb on + strandat 428.365 kb on + strandat 428.365 kb on + strandat 428.366 kb on - strandat 428.366 kb on - strandat 428.467 kb on + strandat 428.467 kb on + strandat 428.467 kb on + strandat 428.467 kb on + strandat 428.468 kb on - strandat 428.468 kb on - strandat 428.468 kb on - strandat 428.468 kb on - strandat 428.468 kb on - strandat 428.468 kb on - strandat 428.468 kb on - strandat 428.468 kb on - strandat 428.468 kb on - strandat 428.501 kb on - strand, within GFF1111at 428.713 kb on + strand, within GFF1111at 428.713 kb on + strand, within GFF1111at 428.713 kb on + strand, within GFF1111at 428.713 kb on + strand, within GFF1111at 428.713 kb on + strand, within GFF1111at 428.713 kb on + strand, within GFF1111at 428.714 kb on - strand, within GFF1111at 428.714 kb on - strand, within GFF1111at 428.714 kb on - strand, within GFF1111at 428.714 kb on - strand, within GFF1111at 428.714 kb on - strand, within GFF1111at 428.734 kb on + strand, within GFF1111at 428.734 kb on + strand, within GFF1111at 428.734 kb on + strand, within GFF1111at 428.734 kb on + strand, within GFF1111at 428.734 kb on + strand, within GFF1111at 428.734 kb on + strand, within GFF1111at 428.735 kb on - strand, within GFF1111at 428.735 kb on - strand, within GFF1111at 428.735 kb on - strand, within GFF1111at 428.735 kb on - strand, within GFF1111at 428.735 kb on - strand, within GFF1111at 428.746 kb on + strand, within GFF1111at 428.746 kb on + strand, within GFF1111at 428.747 kb on - strand, within GFF1111at 428.747 kb on - strand, within GFF1111at 428.747 kb on - strand, within GFF1111at 428.747 kb on - strand, within GFF1111at 428.747 kb on - strand, within GFF1111at 428.830 kb on + strandat 428.830 kb on + strandat 428.869 kb on + strandat 428.869 kb on + strandat 428.869 kb on + strandat 428.869 kb on + strandat 428.869 kb on + strandat 428.869 kb on + strandat 428.870 kb on - strandat 428.870 kb on - strandat 428.921 kb on + strandat 428.921 kb on + strandat 428.922 kb on - strandat 429.105 kb on + strand, within GFF1112at 429.105 kb on + strand, within GFF1112at 429.105 kb on + strand, within GFF1112at 429.105 kb on + strand, within GFF1112at 429.105 kb on + strand, within GFF1112at 429.106 kb on - strand, within GFF1112at 429.106 kb on - strand, within GFF1112at 429.108 kb on + strand, within GFF1112at 429.108 kb on + strand, within GFF1112at 429.108 kb on + strand, within GFF1112at 429.108 kb on + strand, within GFF1112at 429.108 kb on + strand, within GFF1112at 429.109 kb on - strand, within GFF1112at 429.109 kb on - strand, within GFF1112at 429.141 kb on + strand, within GFF1112at 429.141 kb on + strand, within GFF1112at 429.142 kb on - strand, within GFF1112at 429.142 kb on - strand, within GFF1112at 429.145 kb on + strand, within GFF1112at 429.247 kb on - strand, within GFF1112at 429.247 kb on - strand, within GFF1112at 429.247 kb on - strand, within GFF1112at 429.357 kb on + strand, within GFF1112at 429.357 kb on + strand, within GFF1112at 429.358 kb on - strand, within GFF1112at 429.358 kb on - strand, within GFF1112at 429.359 kb on + strand, within GFF1112at 429.359 kb on + strand, within GFF1112at 429.360 kb on - strand, within GFF1112at 429.477 kb on + strand, within GFF1112at 429.477 kb on + strand, within GFF1112at 429.477 kb on + strand, within GFF1112at 429.477 kb on + strand, within GFF1112at 429.477 kb on + strand, within GFF1112at 429.477 kb on + strand, within GFF1112at 429.477 kb on + strand, within GFF1112at 429.478 kb on - strand, within GFF1112at 429.478 kb on - strand, within GFF1112at 429.478 kb on - strand, within GFF1112at 429.478 kb on - strand, within GFF1112at 429.478 kb on - strand, within GFF1112at 429.478 kb on - strand, within GFF1112at 429.478 kb on - strand, within GFF1112at 429.666 kb on + strand, within GFF1112at 429.666 kb on + strand, within GFF1112at 429.667 kb on - strand, within GFF1112at 429.667 kb on - strand, within GFF1112at 429.667 kb on - strand, within GFF1112at 429.795 kb on + strand, within GFF1112at 429.795 kb on + strand, within GFF1112at 429.795 kb on + strand, within GFF1112at 429.795 kb on + strand, within GFF1112at 429.796 kb on - strand, within GFF1112at 429.796 kb on - strand, within GFF1112at 429.796 kb on - strand, within GFF1112at 429.796 kb on - strand, within GFF1112at 429.796 kb on - strand, within GFF1112at 429.796 kb on - strand, within GFF1112at 429.796 kb on - strand, within GFF1112at 429.796 kb on - strand, within GFF1112at 429.819 kb on + strand, within GFF1112at 429.819 kb on + strand, within GFF1112at 429.820 kb on - strand, within GFF1112

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4
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427,440 + -0.9
427,440 + +1.5
427,440 + -0.6
427,441 - -0.7
427,812 + -0.2
428,131 + GFF1110 0.52 -1.4
428,131 + GFF1110 0.52 -0.4
428,132 - GFF1110 0.52 +0.1
428,132 - GFF1110 0.52 +2.7
428,132 - GFF1110 0.52 -2.4
428,132 - GFF1110 0.52 -4.2
428,132 - GFF1110 0.52 -1.4
428,132 - GFF1110 0.52 -1.2
428,132 - GFF1110 0.52 -2.1
428,365 + -1.2
428,365 + -2.3
428,365 + +0.9
428,366 - -0.8
428,366 - -1.5
428,467 + -1.9
428,467 + +0.0
428,467 + -2.6
428,467 + -2.9
428,468 - +0.3
428,468 - -1.0
428,468 - -1.3
428,468 - +0.7
428,468 - +0.9
428,468 - +1.6
428,468 - -1.5
428,468 - +1.6
428,468 - -3.9
428,501 - GFF1111 0.16 +0.7
428,713 + GFF1111 0.69 +0.2
428,713 + GFF1111 0.69 -1.5
428,713 + GFF1111 0.69 +1.5
428,713 + GFF1111 0.69 +0.8
428,713 + GFF1111 0.69 +1.2
428,713 + GFF1111 0.69 +0.3
428,714 - GFF1111 0.70 -0.3
428,714 - GFF1111 0.70 +0.8
428,714 - GFF1111 0.70 -1.5
428,714 - GFF1111 0.70 +1.2
428,714 - GFF1111 0.70 -0.4
428,734 + GFF1111 0.75 -0.4
428,734 + GFF1111 0.75 -0.1
428,734 + GFF1111 0.75 +1.2
428,734 + GFF1111 0.75 +1.7
428,734 + GFF1111 0.75 +0.6
428,734 + GFF1111 0.75 -0.4
428,735 - GFF1111 0.75 +0.6
428,735 - GFF1111 0.75 -1.0
428,735 - GFF1111 0.75 +0.1
428,735 - GFF1111 0.75 +0.1
428,735 - GFF1111 0.75 -2.5
428,746 + GFF1111 0.78 +0.6
428,746 + GFF1111 0.78 -1.2
428,747 - GFF1111 0.78 +0.5
428,747 - GFF1111 0.78 -0.0
428,747 - GFF1111 0.78 -0.7
428,747 - GFF1111 0.78 -2.3
428,747 - GFF1111 0.78 +0.5
428,830 + -3.3
428,830 + +0.3
428,869 + -1.2
428,869 + -2.7
428,869 + +0.0
428,869 + +1.2
428,869 + -3.9
428,869 + -1.9
428,870 - -0.6
428,870 - -1.4
428,921 + +0.0
428,921 + -2.2
428,922 - +1.1
429,105 + GFF1112 0.13 -2.2
429,105 + GFF1112 0.13 +3.0
429,105 + GFF1112 0.13 -1.2
429,105 + GFF1112 0.13 -3.6
429,105 + GFF1112 0.13 -1.6
429,106 - GFF1112 0.13 -1.6
429,106 - GFF1112 0.13 -0.1
429,108 + GFF1112 0.13 -3.2
429,108 + GFF1112 0.13 +1.0
429,108 + GFF1112 0.13 -0.5
429,108 + GFF1112 0.13 +2.1
429,108 + GFF1112 0.13 +2.4
429,109 - GFF1112 0.13 +0.4
429,109 - GFF1112 0.13 +1.4
429,141 + GFF1112 0.16 -1.4
429,141 + GFF1112 0.16 -0.7
429,142 - GFF1112 0.17 -1.0
429,142 - GFF1112 0.17 -0.4
429,145 + GFF1112 0.17 -0.8
429,247 - GFF1112 0.27 -1.9
429,247 - GFF1112 0.27 -0.4
429,247 - GFF1112 0.27 -1.4
429,357 + GFF1112 0.37 -0.7
429,357 + GFF1112 0.37 -2.3
429,358 - GFF1112 0.37 -2.0
429,358 - GFF1112 0.37 -0.3
429,359 + GFF1112 0.37 -0.1
429,359 + GFF1112 0.37 -1.0
429,360 - GFF1112 0.38 -0.1
429,477 + GFF1112 0.49 -2.5
429,477 + GFF1112 0.49 -1.2
429,477 + GFF1112 0.49 -3.9
429,477 + GFF1112 0.49 -2.8
429,477 + GFF1112 0.49 -2.3
429,477 + GFF1112 0.49 +1.3
429,477 + GFF1112 0.49 +0.0
429,478 - GFF1112 0.49 -1.7
429,478 - GFF1112 0.49 -0.2
429,478 - GFF1112 0.49 -0.4
429,478 - GFF1112 0.49 -0.4
429,478 - GFF1112 0.49 +0.0
429,478 - GFF1112 0.49 -0.9
429,478 - GFF1112 0.49 -2.6
429,666 + GFF1112 0.67 +1.0
429,666 + GFF1112 0.67 +0.3
429,667 - GFF1112 0.67 -3.7
429,667 - GFF1112 0.67 +0.2
429,667 - GFF1112 0.67 +2.1
429,795 + GFF1112 0.79 +0.7
429,795 + GFF1112 0.79 -0.4
429,795 + GFF1112 0.79 +0.0
429,795 + GFF1112 0.79 -1.2
429,796 - GFF1112 0.80 -1.7
429,796 - GFF1112 0.80 -3.0
429,796 - GFF1112 0.80 +1.5
429,796 - GFF1112 0.80 -0.2
429,796 - GFF1112 0.80 -1.0
429,796 - GFF1112 0.80 +2.1
429,796 - GFF1112 0.80 +0.1
429,796 - GFF1112 0.80 -2.6
429,819 + GFF1112 0.82 -1.0
429,819 + GFF1112 0.82 +0.5
429,820 - GFF1112 0.82 -1.7

Or see this region's nucleotide sequence