Strain Fitness in Variovorax sp. SCN45 around GFF108

Experiment: Community=arabino-guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF107 and GFF108 are separated by 68 nucleotidesGFF108 and GFF109 are separated by 141 nucleotides GFF107 - General secretion pathway protein K, at 134,887 to 135,846 GFF107 GFF108 - General secretion pathway protein G, at 135,915 to 136,385 GFF108 GFF109 - Protein lysine acetyltransferase Pat (EC 2.3.1.-), at 136,527 to 139,229 GFF109 Position (kb) 135 136 137Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 135.623 kb on + strand, within GFF107at 135.623 kb on + strand, within GFF107at 136.015 kb on + strand, within GFF108at 136.016 kb on - strand, within GFF108at 136.016 kb on - strand, within GFF108at 136.021 kb on + strand, within GFF108at 136.138 kb on + strand, within GFF108at 136.139 kb on - strand, within GFF108at 137.142 kb on + strand, within GFF109at 137.154 kb on - strand, within GFF109

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4
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135,623 + GFF107 0.77 -2.7
135,623 + GFF107 0.77 -0.5
136,015 + GFF108 0.21 -1.5
136,016 - GFF108 0.21 -1.8
136,016 - GFF108 0.21 +0.6
136,021 + GFF108 0.23 -1.4
136,138 + GFF108 0.47 -1.2
136,139 - GFF108 0.48 -4.0
137,142 + GFF109 0.23 +0.1
137,154 - GFF109 0.23 +0.1

Or see this region's nucleotide sequence