Strain Fitness in Variovorax sp. SCN45 around GFF1001

Experiment: Community=arabino-guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF999 and GFF1000 are separated by 163 nucleotidesGFF1000 and GFF1001 are separated by 55 nucleotidesGFF1001 and GFF1002 are separated by 74 nucleotides GFF999 - GTP-binding protein EngA, at 318,457 to 319,800 GFF999 GFF1000 - RNA-binding protein Hfq, at 319,964 to 320,209 GFF1000 GFF1001 - Ribosome LSU-associated GTP-binding protein HflX, at 320,265 to 321,434 GFF1001 GFF1002 - HflK protein, at 321,509 to 322,882 GFF1002 Position (kb) 320 321 322Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 319.869 kb on + strandat 319.870 kb on - strandat 319.920 kb on + strandat 319.920 kb on + strandat 319.920 kb on + strandat 319.941 kb on + strandat 319.941 kb on + strandat 319.941 kb on + strandat 319.941 kb on + strandat 320.210 kb on + strandat 320.210 kb on + strandat 320.210 kb on + strandat 320.211 kb on - strandat 320.568 kb on + strand, within GFF1001at 320.568 kb on + strand, within GFF1001at 320.568 kb on + strand, within GFF1001at 320.568 kb on + strand, within GFF1001at 320.568 kb on + strand, within GFF1001at 320.568 kb on + strand, within GFF1001at 320.568 kb on + strand, within GFF1001at 320.568 kb on + strand, within GFF1001at 320.568 kb on + strand, within GFF1001at 320.568 kb on + strand, within GFF1001at 320.568 kb on + strand, within GFF1001at 320.568 kb on + strand, within GFF1001at 320.569 kb on - strand, within GFF1001at 320.569 kb on - strand, within GFF1001at 320.569 kb on - strand, within GFF1001at 320.569 kb on - strand, within GFF1001at 320.569 kb on - strand, within GFF1001at 320.569 kb on - strand, within GFF1001at 320.569 kb on - strand, within GFF1001at 320.569 kb on - strand, within GFF1001at 320.569 kb on - strand, within GFF1001at 320.569 kb on - strand, within GFF1001at 320.569 kb on - strand, within GFF1001at 320.569 kb on - strand, within GFF1001at 320.569 kb on - strand, within GFF1001at 320.569 kb on - strand, within GFF1001at 320.638 kb on + strand, within GFF1001at 320.638 kb on + strand, within GFF1001at 320.638 kb on + strand, within GFF1001at 320.638 kb on + strand, within GFF1001at 320.638 kb on + strand, within GFF1001at 320.639 kb on - strand, within GFF1001at 320.639 kb on - strand, within GFF1001at 320.639 kb on - strand, within GFF1001at 320.639 kb on - strand, within GFF1001at 320.639 kb on - strand, within GFF1001at 320.639 kb on - strand, within GFF1001at 320.658 kb on + strand, within GFF1001at 320.658 kb on + strand, within GFF1001at 320.658 kb on + strand, within GFF1001at 320.658 kb on + strand, within GFF1001at 320.658 kb on + strand, within GFF1001at 320.658 kb on + strand, within GFF1001at 320.658 kb on + strand, within GFF1001at 320.659 kb on - strand, within GFF1001at 320.659 kb on - strand, within GFF1001at 320.659 kb on - strand, within GFF1001at 320.659 kb on - strand, within GFF1001at 320.659 kb on - strand, within GFF1001at 320.659 kb on - strand, within GFF1001at 320.659 kb on - strand, within GFF1001at 320.659 kb on - strand, within GFF1001at 320.659 kb on - strand, within GFF1001at 320.883 kb on + strand, within GFF1001at 320.884 kb on - strand, within GFF1001at 320.884 kb on - strand, within GFF1001at 320.884 kb on - strand, within GFF1001at 320.885 kb on + strand, within GFF1001at 320.885 kb on + strand, within GFF1001at 320.885 kb on + strand, within GFF1001at 320.885 kb on + strand, within GFF1001at 320.885 kb on + strand, within GFF1001at 320.885 kb on + strand, within GFF1001at 320.885 kb on + strand, within GFF1001at 320.885 kb on + strand, within GFF1001at 320.885 kb on + strand, within GFF1001at 320.885 kb on + strand, within GFF1001at 320.886 kb on - strand, within GFF1001at 320.886 kb on - strand, within GFF1001at 320.886 kb on - strand, within GFF1001at 320.886 kb on - strand, within GFF1001at 320.886 kb on - strand, within GFF1001at 320.886 kb on - strand, within GFF1001at 320.886 kb on - strand, within GFF1001at 320.886 kb on - strand, within GFF1001at 320.886 kb on - strand, within GFF1001at 320.886 kb on - strand, within GFF1001at 320.886 kb on - strand, within GFF1001at 320.886 kb on - strand, within GFF1001at 320.886 kb on - strand, within GFF1001at 320.886 kb on - strand, within GFF1001at 320.886 kb on - strand, within GFF1001at 320.886 kb on - strand, within GFF1001at 320.937 kb on + strand, within GFF1001at 320.937 kb on + strand, within GFF1001at 320.937 kb on + strand, within GFF1001at 320.938 kb on - strand, within GFF1001at 320.938 kb on - strand, within GFF1001at 320.938 kb on - strand, within GFF1001at 320.938 kb on - strand, within GFF1001at 320.988 kb on + strand, within GFF1001at 320.988 kb on + strand, within GFF1001at 320.988 kb on + strand, within GFF1001at 320.988 kb on + strand, within GFF1001at 320.988 kb on + strand, within GFF1001at 320.989 kb on - strand, within GFF1001at 320.989 kb on - strand, within GFF1001at 321.144 kb on + strand, within GFF1001at 321.145 kb on - strand, within GFF1001at 321.380 kb on - strandat 321.386 kb on + strandat 321.646 kb on + strandat 321.646 kb on + strandat 321.646 kb on + strandat 321.646 kb on + strandat 321.646 kb on + strandat 321.647 kb on - strand, within GFF1002at 321.647 kb on - strand, within GFF1002at 321.647 kb on - strand, within GFF1002at 321.647 kb on - strand, within GFF1002at 321.647 kb on - strand, within GFF1002at 321.647 kb on - strand, within GFF1002at 321.938 kb on + strand, within GFF1002at 321.939 kb on - strand, within GFF1002at 321.980 kb on + strand, within GFF1002at 321.981 kb on - strand, within GFF1002at 322.130 kb on + strand, within GFF1002at 322.130 kb on + strand, within GFF1002at 322.130 kb on + strand, within GFF1002at 322.130 kb on + strand, within GFF1002at 322.131 kb on - strand, within GFF1002at 322.160 kb on + strand, within GFF1002at 322.160 kb on + strand, within GFF1002at 322.160 kb on + strand, within GFF1002at 322.161 kb on - strand, within GFF1002at 322.161 kb on - strand, within GFF1002at 322.161 kb on - strand, within GFF1002at 322.316 kb on + strand, within GFF1002at 322.316 kb on + strand, within GFF1002at 322.316 kb on + strand, within GFF1002at 322.316 kb on + strand, within GFF1002at 322.316 kb on + strand, within GFF1002at 322.316 kb on + strand, within GFF1002at 322.316 kb on + strand, within GFF1002at 322.317 kb on - strand, within GFF1002at 322.317 kb on - strand, within GFF1002at 322.317 kb on - strand, within GFF1002at 322.317 kb on - strand, within GFF1002at 322.317 kb on - strand, within GFF1002at 322.317 kb on - strand, within GFF1002

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4
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319,869 + -0.5
319,870 - +0.6
319,920 + +1.1
319,920 + -2.1
319,920 + -0.7
319,941 + +1.0
319,941 + +0.0
319,941 + +1.1
319,941 + +1.6
320,210 + -2.4
320,210 + -2.0
320,210 + -2.4
320,211 - -1.0
320,568 + GFF1001 0.26 +1.3
320,568 + GFF1001 0.26 +0.0
320,568 + GFF1001 0.26 +2.3
320,568 + GFF1001 0.26 -1.7
320,568 + GFF1001 0.26 +0.5
320,568 + GFF1001 0.26 -1.2
320,568 + GFF1001 0.26 -4.1
320,568 + GFF1001 0.26 -1.4
320,568 + GFF1001 0.26 +0.5
320,568 + GFF1001 0.26 -3.1
320,568 + GFF1001 0.26 +0.0
320,568 + GFF1001 0.26 -0.4
320,569 - GFF1001 0.26 +0.4
320,569 - GFF1001 0.26 -2.1
320,569 - GFF1001 0.26 -1.7
320,569 - GFF1001 0.26 +0.8
320,569 - GFF1001 0.26 -0.9
320,569 - GFF1001 0.26 -1.9
320,569 - GFF1001 0.26 -0.5
320,569 - GFF1001 0.26 -1.6
320,569 - GFF1001 0.26 -1.9
320,569 - GFF1001 0.26 -1.6
320,569 - GFF1001 0.26 -2.0
320,569 - GFF1001 0.26 +0.8
320,569 - GFF1001 0.26 +0.7
320,569 - GFF1001 0.26 +2.0
320,638 + GFF1001 0.32 +0.2
320,638 + GFF1001 0.32 -3.2
320,638 + GFF1001 0.32 -2.2
320,638 + GFF1001 0.32 -3.3
320,638 + GFF1001 0.32 +0.2
320,639 - GFF1001 0.32 -0.2
320,639 - GFF1001 0.32 -0.0
320,639 - GFF1001 0.32 -3.4
320,639 - GFF1001 0.32 -1.6
320,639 - GFF1001 0.32 +0.2
320,639 - GFF1001 0.32 +0.8
320,658 + GFF1001 0.34 -1.3
320,658 + GFF1001 0.34 +0.6
320,658 + GFF1001 0.34 +2.6
320,658 + GFF1001 0.34 +0.0
320,658 + GFF1001 0.34 -2.3
320,658 + GFF1001 0.34 -1.1
320,658 + GFF1001 0.34 +0.1
320,659 - GFF1001 0.34 +1.8
320,659 - GFF1001 0.34 -1.2
320,659 - GFF1001 0.34 -3.9
320,659 - GFF1001 0.34 -1.6
320,659 - GFF1001 0.34 -1.2
320,659 - GFF1001 0.34 -1.2
320,659 - GFF1001 0.34 -2.2
320,659 - GFF1001 0.34 +2.1
320,659 - GFF1001 0.34 -1.0
320,883 + GFF1001 0.53 -1.6
320,884 - GFF1001 0.53 -2.9
320,884 - GFF1001 0.53 +1.5
320,884 - GFF1001 0.53 +0.4
320,885 + GFF1001 0.53 +1.8
320,885 + GFF1001 0.53 -2.9
320,885 + GFF1001 0.53 -1.8
320,885 + GFF1001 0.53 +0.5
320,885 + GFF1001 0.53 -0.4
320,885 + GFF1001 0.53 -2.6
320,885 + GFF1001 0.53 +1.3
320,885 + GFF1001 0.53 -1.5
320,885 + GFF1001 0.53 -0.1
320,885 + GFF1001 0.53 +1.1
320,886 - GFF1001 0.53 -0.5
320,886 - GFF1001 0.53 -0.9
320,886 - GFF1001 0.53 +0.6
320,886 - GFF1001 0.53 +1.0
320,886 - GFF1001 0.53 +0.0
320,886 - GFF1001 0.53 +1.6
320,886 - GFF1001 0.53 -1.7
320,886 - GFF1001 0.53 -3.1
320,886 - GFF1001 0.53 -2.9
320,886 - GFF1001 0.53 -2.0
320,886 - GFF1001 0.53 -2.0
320,886 - GFF1001 0.53 +0.3
320,886 - GFF1001 0.53 -0.5
320,886 - GFF1001 0.53 +0.6
320,886 - GFF1001 0.53 -2.4
320,886 - GFF1001 0.53 -0.9
320,937 + GFF1001 0.57 -1.7
320,937 + GFF1001 0.57 -2.4
320,937 + GFF1001 0.57 +0.6
320,938 - GFF1001 0.58 -1.0
320,938 - GFF1001 0.58 -0.6
320,938 - GFF1001 0.58 -2.1
320,938 - GFF1001 0.58 -2.7
320,988 + GFF1001 0.62 -1.2
320,988 + GFF1001 0.62 -2.9
320,988 + GFF1001 0.62 -1.3
320,988 + GFF1001 0.62 -1.4
320,988 + GFF1001 0.62 -2.5
320,989 - GFF1001 0.62 -2.7
320,989 - GFF1001 0.62 -2.4
321,144 + GFF1001 0.75 -2.6
321,145 - GFF1001 0.75 +1.3
321,380 - -1.0
321,386 + +1.4
321,646 + -0.7
321,646 + -1.0
321,646 + -3.4
321,646 + -2.3
321,646 + -1.3
321,647 - GFF1002 0.10 +0.0
321,647 - GFF1002 0.10 -3.3
321,647 - GFF1002 0.10 -2.0
321,647 - GFF1002 0.10 -1.2
321,647 - GFF1002 0.10 -2.2
321,647 - GFF1002 0.10 -1.0
321,938 + GFF1002 0.31 -0.7
321,939 - GFF1002 0.31 -2.6
321,980 + GFF1002 0.34 -1.0
321,981 - GFF1002 0.34 -1.3
322,130 + GFF1002 0.45 -2.3
322,130 + GFF1002 0.45 -3.8
322,130 + GFF1002 0.45 +0.7
322,130 + GFF1002 0.45 +0.8
322,131 - GFF1002 0.45 +1.5
322,160 + GFF1002 0.47 -1.2
322,160 + GFF1002 0.47 -1.0
322,160 + GFF1002 0.47 +0.7
322,161 - GFF1002 0.47 -2.2
322,161 - GFF1002 0.47 -2.3
322,161 - GFF1002 0.47 +0.6
322,316 + GFF1002 0.59 +1.4
322,316 + GFF1002 0.59 -3.4
322,316 + GFF1002 0.59 -0.3
322,316 + GFF1002 0.59 -0.4
322,316 + GFF1002 0.59 -0.0
322,316 + GFF1002 0.59 -1.1
322,316 + GFF1002 0.59 -3.2
322,317 - GFF1002 0.59 -1.7
322,317 - GFF1002 0.59 +0.6
322,317 - GFF1002 0.59 -3.1
322,317 - GFF1002 0.59 -2.6
322,317 - GFF1002 0.59 -3.5
322,317 - GFF1002 0.59 -2.6

Or see this region's nucleotide sequence