Strain Fitness in Variovorax sp. SCN45 around GFF980

Experiment: Community=arabino-guar; Passage=4

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF979 and GFF980 are separated by 53 nucleotidesGFF980 and GFF981 are separated by 18 nucleotides GFF979 - 2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2), at 295,062 to 297,938 GFF979 GFF980 - Dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarate dehydrogenase complex (EC 2.3.1.61), at 297,992 to 299,263 GFF980 GFF981 - Dihydrolipoamide dehydrogenase of 2-oxoglutarate dehydrogenase (EC 1.8.1.4), at 299,282 to 300,712 GFF981 Position (kb) 297 298 299 300Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 297.936 kb on + strandat 297.936 kb on + strandat 297.936 kb on + strandat 297.936 kb on + strandat 297.936 kb on + strandat 297.936 kb on + strandat 297.936 kb on + strandat 297.936 kb on + strandat 297.936 kb on + strandat 297.936 kb on + strandat 297.936 kb on + strandat 297.936 kb on + strandat 297.936 kb on + strandat 297.936 kb on + strandat 297.936 kb on + strandat 297.936 kb on + strandat 297.936 kb on + strandat 297.936 kb on + strandat 297.936 kb on + strandat 297.939 kb on + strandat 297.939 kb on + strandat 297.939 kb on + strandat 297.939 kb on + strandat 297.939 kb on + strandat 297.939 kb on + strandat 297.939 kb on + strandat 297.939 kb on + strandat 297.939 kb on + strandat 297.939 kb on + strandat 297.939 kb on + strandat 297.939 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4
remove
297,936 + +0.8
297,936 + +0.2
297,936 + +1.6
297,936 + +0.2
297,936 + +0.9
297,936 + -0.4
297,936 + -2.5
297,936 + +2.0
297,936 + +0.4
297,936 + +0.5
297,936 + -0.6
297,936 + -2.0
297,936 + +1.2
297,936 + -0.9
297,936 + -0.5
297,936 + -0.5
297,936 + -2.1
297,936 + +0.8
297,936 + -4.3
297,939 + +0.2
297,939 + -1.0
297,939 + -0.7
297,939 + -0.3
297,939 + +2.2
297,939 + +3.5
297,939 + -0.5
297,939 + -1.0
297,939 + +0.5
297,939 + -1.7
297,939 + -1.1
297,939 + +3.1

Or see this region's nucleotide sequence