Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF929 and GFF930 are separated by 27 nucleotides GFF930 and GFF931 are separated by 128 nucleotides GFF931 and GFF932 are separated by 10 nucleotides GFF932 and GFF933 overlap by 7 nucleotides
GFF929 - Transcriptional regulator, IclR family, at 241,791 to 242,579
GFF929
GFF930 - Transcriptional regulator, GntR family, at 242,607 to 243,248
GFF930
GFF931 - Methylmalonyl-CoA mutase (EC 5.4.99.2) / B12 binding domain of Methylmalonyl-CoA mutase (EC 5.4.99.2), at 243,377 to 245,539
GFF931
GFF932 - Acetyltransferase, GNAT family, at 245,550 to 246,026
GFF932
GFF933 - YgfD: protein that forms a complex with the methylmalonyl-CoA mutase in a pathway for conversion of succinyl-CoA to propionyl-CoA, at 246,020 to 247,069
GFF933
Position (kb) 243
244
245
246 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 242.413 kb on + strand, within GFF929 at 242.413 kb on + strand, within GFF929 at 242.413 kb on + strand, within GFF929 at 242.413 kb on + strand, within GFF929 at 242.413 kb on + strand, within GFF929 at 242.413 kb on + strand, within GFF929 at 242.413 kb on + strand, within GFF929 at 242.414 kb on - strand, within GFF929 at 242.448 kb on + strand, within GFF929 at 242.448 kb on + strand, within GFF929 at 242.449 kb on - strand, within GFF929 at 242.449 kb on - strand, within GFF929 at 242.449 kb on - strand, within GFF929 at 242.475 kb on + strand, within GFF929 at 242.475 kb on + strand, within GFF929 at 242.475 kb on + strand, within GFF929 at 242.475 kb on + strand, within GFF929 at 242.476 kb on - strand, within GFF929 at 242.476 kb on - strand, within GFF929 at 242.476 kb on - strand, within GFF929 at 242.608 kb on + strand at 242.608 kb on + strand at 242.608 kb on + strand at 242.608 kb on + strand at 242.609 kb on - strand at 242.609 kb on - strand at 242.995 kb on + strand, within GFF930 at 242.995 kb on + strand, within GFF930 at 242.995 kb on + strand, within GFF930 at 242.995 kb on + strand, within GFF930 at 242.995 kb on + strand, within GFF930 at 242.996 kb on - strand, within GFF930 at 242.996 kb on - strand, within GFF930 at 242.996 kb on - strand, within GFF930 at 242.996 kb on - strand, within GFF930 at 243.034 kb on + strand, within GFF930 at 243.034 kb on + strand, within GFF930 at 243.034 kb on + strand, within GFF930 at 243.034 kb on + strand, within GFF930 at 243.035 kb on - strand, within GFF930 at 243.035 kb on - strand, within GFF930 at 243.081 kb on + strand, within GFF930 at 243.081 kb on + strand, within GFF930 at 243.081 kb on + strand, within GFF930 at 243.082 kb on - strand, within GFF930 at 243.082 kb on - strand, within GFF930 at 243.082 kb on - strand, within GFF930 at 243.082 kb on - strand, within GFF930 at 243.082 kb on - strand, within GFF930 at 243.122 kb on - strand, within GFF930 at 243.122 kb on - strand, within GFF930 at 243.122 kb on - strand, within GFF930 at 243.214 kb on + strand at 243.214 kb on + strand at 243.214 kb on + strand at 243.214 kb on + strand at 243.215 kb on - strand at 243.215 kb on - strand at 243.215 kb on - strand at 243.215 kb on - strand at 243.215 kb on - strand at 243.230 kb on + strand at 243.231 kb on - strand at 243.231 kb on - strand at 243.260 kb on + strand at 243.260 kb on + strand at 243.260 kb on + strand at 243.260 kb on + strand at 243.260 kb on + strand at 243.260 kb on + strand at 243.260 kb on + strand at 243.261 kb on - strand at 243.261 kb on - strand at 243.261 kb on - strand at 243.290 kb on - strand at 243.300 kb on + strand at 243.300 kb on + strand at 243.300 kb on + strand at 243.300 kb on + strand at 243.301 kb on - strand at 243.301 kb on - strand at 243.345 kb on + strand at 243.345 kb on + strand at 243.345 kb on + strand at 243.345 kb on + strand at 243.345 kb on + strand at 243.345 kb on + strand at 243.345 kb on + strand at 243.345 kb on + strand at 243.346 kb on - strand at 243.346 kb on - strand at 243.346 kb on - strand at 243.346 kb on - strand at 243.515 kb on + strand at 243.515 kb on + strand at 243.515 kb on + strand at 243.545 kb on + strand at 243.545 kb on + strand at 243.545 kb on + strand at 243.545 kb on + strand at 243.545 kb on + strand at 243.575 kb on + strand at 243.575 kb on + strand at 243.575 kb on + strand at 243.575 kb on + strand at 243.575 kb on + strand at 243.576 kb on - strand at 243.602 kb on + strand, within GFF931 at 243.602 kb on + strand, within GFF931 at 243.602 kb on + strand, within GFF931 at 243.602 kb on + strand, within GFF931 at 243.602 kb on + strand, within GFF931 at 243.602 kb on + strand, within GFF931 at 243.603 kb on - strand, within GFF931 at 243.603 kb on - strand, within GFF931 at 243.603 kb on - strand, within GFF931 at 243.603 kb on - strand, within GFF931 at 243.603 kb on - strand, within GFF931 at 243.603 kb on - strand, within GFF931 at 243.603 kb on - strand, within GFF931 at 243.603 kb on - strand, within GFF931 at 243.603 kb on - strand, within GFF931 at 243.603 kb on - strand, within GFF931 at 243.632 kb on + strand, within GFF931 at 243.632 kb on + strand, within GFF931 at 243.632 kb on + strand, within GFF931 at 243.633 kb on - strand, within GFF931 at 243.671 kb on + strand, within GFF931 at 243.672 kb on - strand, within GFF931 at 243.672 kb on - strand, within GFF931 at 243.672 kb on - strand, within GFF931 at 243.740 kb on + strand, within GFF931 at 243.789 kb on + strand, within GFF931 at 243.790 kb on - strand, within GFF931 at 243.790 kb on - strand, within GFF931 at 243.900 kb on - strand, within GFF931 at 243.995 kb on + strand, within GFF931 at 243.995 kb on + strand, within GFF931 at 243.995 kb on + strand, within GFF931 at 243.995 kb on + strand, within GFF931 at 243.995 kb on + strand, within GFF931 at 243.995 kb on + strand, within GFF931 at 243.995 kb on + strand, within GFF931 at 243.995 kb on + strand, within GFF931 at 243.995 kb on + strand, within GFF931 at 243.995 kb on + strand, within GFF931 at 243.996 kb on - strand, within GFF931 at 243.996 kb on - strand, within GFF931 at 243.996 kb on - strand, within GFF931 at 243.996 kb on - strand, within GFF931 at 243.996 kb on - strand, within GFF931 at 243.996 kb on - strand, within GFF931 at 243.996 kb on - strand, within GFF931 at 243.996 kb on - strand, within GFF931 at 244.046 kb on + strand, within GFF931 at 244.046 kb on + strand, within GFF931 at 244.046 kb on + strand, within GFF931 at 244.047 kb on - strand, within GFF931 at 244.163 kb on + strand, within GFF931 at 244.163 kb on + strand, within GFF931 at 244.164 kb on - strand, within GFF931 at 244.164 kb on - strand, within GFF931 at 244.250 kb on + strand, within GFF931 at 244.250 kb on + strand, within GFF931 at 244.250 kb on + strand, within GFF931 at 244.250 kb on + strand, within GFF931 at 244.251 kb on - strand, within GFF931 at 244.251 kb on - strand, within GFF931 at 244.391 kb on + strand, within GFF931 at 244.392 kb on - strand, within GFF931 at 244.586 kb on + strand, within GFF931 at 244.586 kb on + strand, within GFF931 at 244.586 kb on + strand, within GFF931 at 244.586 kb on + strand, within GFF931 at 244.586 kb on + strand, within GFF931 at 244.587 kb on - strand, within GFF931 at 244.587 kb on - strand, within GFF931 at 244.587 kb on - strand, within GFF931 at 244.587 kb on - strand, within GFF931 at 244.587 kb on - strand, within GFF931 at 244.587 kb on - strand, within GFF931 at 244.775 kb on + strand, within GFF931 at 244.775 kb on + strand, within GFF931 at 244.775 kb on + strand, within GFF931 at 244.775 kb on + strand, within GFF931 at 244.775 kb on + strand, within GFF931 at 244.775 kb on + strand, within GFF931 at 244.775 kb on + strand, within GFF931 at 244.776 kb on - strand, within GFF931 at 244.776 kb on - strand, within GFF931 at 244.776 kb on - strand, within GFF931 at 244.776 kb on - strand, within GFF931 at 245.060 kb on + strand, within GFF931 at 245.060 kb on + strand, within GFF931 at 245.060 kb on + strand, within GFF931 at 245.060 kb on + strand, within GFF931 at 245.060 kb on + strand, within GFF931 at 245.060 kb on + strand, within GFF931 at 245.061 kb on - strand, within GFF931 at 245.061 kb on - strand, within GFF931 at 245.072 kb on + strand, within GFF931 at 245.429 kb on + strand at 245.430 kb on - strand at 245.442 kb on - strand at 245.465 kb on + strand at 245.465 kb on + strand at 245.465 kb on + strand at 245.466 kb on - strand at 245.466 kb on - strand at 245.466 kb on - strand at 245.715 kb on + strand, within GFF932 at 245.715 kb on + strand, within GFF932 at 245.715 kb on + strand, within GFF932 at 245.715 kb on + strand, within GFF932 at 245.716 kb on - strand, within GFF932 at 245.716 kb on - strand, within GFF932 at 245.716 kb on - strand, within GFF932 at 245.716 kb on - strand, within GFF932 at 245.716 kb on - strand, within GFF932 at 245.716 kb on - strand, within GFF932 at 245.716 kb on - strand, within GFF932 at 245.808 kb on + strand, within GFF932 at 245.808 kb on + strand, within GFF932 at 245.809 kb on - strand, within GFF932 at 245.937 kb on + strand, within GFF932 at 245.985 kb on + strand at 245.985 kb on + strand at 245.985 kb on + strand at 245.985 kb on + strand at 245.986 kb on - strand at 245.986 kb on - strand at 245.988 kb on + strand at 245.988 kb on + strand at 245.988 kb on + strand at 246.377 kb on + strand, within GFF933 at 246.377 kb on + strand, within GFF933 at 246.378 kb on - strand, within GFF933 at 246.381 kb on + strand, within GFF933 at 246.381 kb on + strand, within GFF933 at 246.381 kb on + strand, within GFF933 at 246.381 kb on + strand, within GFF933 at 246.382 kb on - strand, within GFF933 at 246.382 kb on - strand, within GFF933 at 246.382 kb on - strand, within GFF933 at 246.382 kb on - strand, within GFF933 at 246.382 kb on - strand, within GFF933
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 242,413 + GFF929 0.79 -2.2 242,413 + GFF929 0.79 +0.3 242,413 + GFF929 0.79 +0.5 242,413 + GFF929 0.79 -0.3 242,413 + GFF929 0.79 +0.5 242,413 + GFF929 0.79 -0.9 242,413 + GFF929 0.79 -2.3 242,414 - GFF929 0.79 +0.4 242,448 + GFF929 0.83 -0.4 242,448 + GFF929 0.83 +0.3 242,449 - GFF929 0.83 -1.4 242,449 - GFF929 0.83 +0.3 242,449 - GFF929 0.83 -2.1 242,475 + GFF929 0.87 -1.0 242,475 + GFF929 0.87 -0.9 242,475 + GFF929 0.87 -0.2 242,475 + GFF929 0.87 +0.7 242,476 - GFF929 0.87 +2.7 242,476 - GFF929 0.87 -2.5 242,476 - GFF929 0.87 +1.0 242,608 + -0.1 242,608 + -0.1 242,608 + -2.2 242,608 + -0.3 242,609 - -3.6 242,609 - -2.7 242,995 + GFF930 0.60 -1.8 242,995 + GFF930 0.60 -3.8 242,995 + GFF930 0.60 +1.0 242,995 + GFF930 0.60 -0.7 242,995 + GFF930 0.60 +0.5 242,996 - GFF930 0.61 -1.2 242,996 - GFF930 0.61 -2.4 242,996 - GFF930 0.61 +0.0 242,996 - GFF930 0.61 -2.4 243,034 + GFF930 0.67 +0.4 243,034 + GFF930 0.67 -1.3 243,034 + GFF930 0.67 -1.8 243,034 + GFF930 0.67 -1.3 243,035 - GFF930 0.67 +0.7 243,035 - GFF930 0.67 -3.0 243,081 + GFF930 0.74 -2.6 243,081 + GFF930 0.74 +1.0 243,081 + GFF930 0.74 +1.5 243,082 - GFF930 0.74 -0.1 243,082 - GFF930 0.74 +1.2 243,082 - GFF930 0.74 -1.7 243,082 - GFF930 0.74 +1.1 243,082 - GFF930 0.74 +0.5 243,122 - GFF930 0.80 -0.8 243,122 - GFF930 0.80 -1.8 243,122 - GFF930 0.80 -1.9 243,214 + +0.4 243,214 + -1.4 243,214 + -0.2 243,214 + -1.5 243,215 - -0.5 243,215 - -1.1 243,215 - +0.0 243,215 - -1.0 243,215 - +0.7 243,230 + +0.5 243,231 - -2.0 243,231 - +0.9 243,260 + +1.6 243,260 + -1.0 243,260 + +0.0 243,260 + -1.1 243,260 + -0.2 243,260 + -2.1 243,260 + -0.1 243,261 - -0.1 243,261 - -1.5 243,261 - +0.1 243,290 - +0.8 243,300 + -0.7 243,300 + -1.5 243,300 + +2.1 243,300 + -1.3 243,301 - -1.1 243,301 - -3.5 243,345 + -2.1 243,345 + +1.1 243,345 + -1.7 243,345 + +0.0 243,345 + -1.4 243,345 + -1.7 243,345 + -1.4 243,345 + +0.3 243,346 - +0.1 243,346 - +0.0 243,346 - -0.5 243,346 - -1.4 243,515 + +0.9 243,515 + -0.8 243,515 + +2.3 243,545 + +1.3 243,545 + -2.6 243,545 + -0.7 243,545 + +1.7 243,545 + -1.5 243,575 + -1.4 243,575 + +0.2 243,575 + +2.6 243,575 + +2.3 243,575 + +1.0 243,576 - -0.9 243,602 + GFF931 0.10 -1.9 243,602 + GFF931 0.10 +0.4 243,602 + GFF931 0.10 -3.4 243,602 + GFF931 0.10 -0.5 243,602 + GFF931 0.10 +0.9 243,602 + GFF931 0.10 -0.7 243,603 - GFF931 0.10 -0.5 243,603 - GFF931 0.10 -2.7 243,603 - GFF931 0.10 +0.1 243,603 - GFF931 0.10 -0.1 243,603 - GFF931 0.10 +0.7 243,603 - GFF931 0.10 -3.0 243,603 - GFF931 0.10 -1.9 243,603 - GFF931 0.10 -0.5 243,603 - GFF931 0.10 +0.0 243,603 - GFF931 0.10 -4.0 243,632 + GFF931 0.12 +0.4 243,632 + GFF931 0.12 -0.2 243,632 + GFF931 0.12 -1.4 243,633 - GFF931 0.12 -1.9 243,671 + GFF931 0.14 +0.2 243,672 - GFF931 0.14 -0.9 243,672 - GFF931 0.14 -3.4 243,672 - GFF931 0.14 +0.8 243,740 + GFF931 0.17 -1.9 243,789 + GFF931 0.19 -2.5 243,790 - GFF931 0.19 -0.5 243,790 - GFF931 0.19 -2.8 243,900 - GFF931 0.24 -2.5 243,995 + GFF931 0.29 -0.8 243,995 + GFF931 0.29 -1.1 243,995 + GFF931 0.29 +0.4 243,995 + GFF931 0.29 -4.0 243,995 + GFF931 0.29 -0.9 243,995 + GFF931 0.29 -0.8 243,995 + GFF931 0.29 -3.0 243,995 + GFF931 0.29 -0.6 243,995 + GFF931 0.29 -1.6 243,995 + GFF931 0.29 -0.6 243,996 - GFF931 0.29 +0.5 243,996 - GFF931 0.29 -4.8 243,996 - GFF931 0.29 -1.4 243,996 - GFF931 0.29 -1.4 243,996 - GFF931 0.29 -2.1 243,996 - GFF931 0.29 -2.4 243,996 - GFF931 0.29 -1.2 243,996 - GFF931 0.29 -3.6 244,046 + GFF931 0.31 -0.6 244,046 + GFF931 0.31 -0.3 244,046 + GFF931 0.31 -0.9 244,047 - GFF931 0.31 -1.0 244,163 + GFF931 0.36 +0.3 244,163 + GFF931 0.36 -0.9 244,164 - GFF931 0.36 -2.7 244,164 - GFF931 0.36 -2.4 244,250 + GFF931 0.40 -0.8 244,250 + GFF931 0.40 -0.5 244,250 + GFF931 0.40 -0.9 244,250 + GFF931 0.40 -2.4 244,251 - GFF931 0.40 -1.9 244,251 - GFF931 0.40 +0.3 244,391 + GFF931 0.47 -2.9 244,392 - GFF931 0.47 -0.2 244,586 + GFF931 0.56 -1.8 244,586 + GFF931 0.56 -2.2 244,586 + GFF931 0.56 +0.0 244,586 + GFF931 0.56 -1.9 244,586 + GFF931 0.56 -1.1 244,587 - GFF931 0.56 -1.5 244,587 - GFF931 0.56 -4.8 244,587 - GFF931 0.56 +0.8 244,587 - GFF931 0.56 -1.4 244,587 - GFF931 0.56 -1.9 244,587 - GFF931 0.56 -1.2 244,775 + GFF931 0.65 -1.1 244,775 + GFF931 0.65 -3.0 244,775 + GFF931 0.65 -2.0 244,775 + GFF931 0.65 +1.1 244,775 + GFF931 0.65 -0.9 244,775 + GFF931 0.65 -3.6 244,775 + GFF931 0.65 -0.9 244,776 - GFF931 0.65 -2.9 244,776 - GFF931 0.65 -0.1 244,776 - GFF931 0.65 +0.5 244,776 - GFF931 0.65 -1.4 245,060 + GFF931 0.78 +0.2 245,060 + GFF931 0.78 -1.0 245,060 + GFF931 0.78 -2.1 245,060 + GFF931 0.78 -2.7 245,060 + GFF931 0.78 -2.6 245,060 + GFF931 0.78 -0.1 245,061 - GFF931 0.78 -2.4 245,061 - GFF931 0.78 -1.0 245,072 + GFF931 0.78 -2.4 245,429 + -1.5 245,430 - -0.7 245,442 - -2.4 245,465 + -0.9 245,465 + +0.9 245,465 + -4.2 245,466 - +1.2 245,466 - -1.4 245,466 - -1.6 245,715 + GFF932 0.35 -2.1 245,715 + GFF932 0.35 -1.1 245,715 + GFF932 0.35 -0.5 245,715 + GFF932 0.35 -0.5 245,716 - GFF932 0.35 -2.9 245,716 - GFF932 0.35 -2.0 245,716 - GFF932 0.35 +1.9 245,716 - GFF932 0.35 -0.2 245,716 - GFF932 0.35 +0.9 245,716 - GFF932 0.35 +0.1 245,716 - GFF932 0.35 -1.5 245,808 + GFF932 0.54 +1.7 245,808 + GFF932 0.54 -1.1 245,809 - GFF932 0.54 -2.9 245,937 + GFF932 0.81 +0.5 245,985 + -2.1 245,985 + -3.5 245,985 + +1.0 245,985 + +1.1 245,986 - -2.2 245,986 - -1.7 245,988 + -1.7 245,988 + -1.1 245,988 + +0.7 246,377 + GFF933 0.34 -0.9 246,377 + GFF933 0.34 -1.4 246,378 - GFF933 0.34 +0.6 246,381 + GFF933 0.34 +0.3 246,381 + GFF933 0.34 +2.1 246,381 + GFF933 0.34 +0.3 246,381 + GFF933 0.34 +1.2 246,382 - GFF933 0.34 -2.0 246,382 - GFF933 0.34 -0.6 246,382 - GFF933 0.34 +0.9 246,382 - GFF933 0.34 -1.1 246,382 - GFF933 0.34 -2.0
Or see this region's nucleotide sequence