Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF853 and GFF854 overlap by 4 nucleotides GFF854 and GFF855 are separated by 31 nucleotides GFF855 and GFF856 are separated by 9 nucleotides GFF856 and GFF857 are separated by 22 nucleotides
GFF853 - hypothetical protein, at 161,111 to 162,307
GFF853
GFF854 - hypothetical protein, at 162,304 to 162,867
GFF854
GFF855 - Palmitoyl-CoA hydrolase( EC:3.1.2.2 ), at 162,899 to 163,588
GFF855
GFF856 - no description, at 163,598 to 164,095
GFF856
GFF857 - no description, at 164,118 to 164,975
GFF857
Position (kb) 162
163
164 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 162.102 kb on + strand, within GFF853 at 162.389 kb on + strand, within GFF854 at 162.465 kb on - strand, within GFF854 at 162.621 kb on + strand, within GFF854 at 162.621 kb on + strand, within GFF854 at 162.791 kb on + strand, within GFF854 at 162.791 kb on + strand, within GFF854 at 162.883 kb on + strand at 162.883 kb on + strand at 162.883 kb on + strand at 162.884 kb on - strand at 163.254 kb on + strand, within GFF855 at 163.254 kb on + strand, within GFF855 at 163.255 kb on - strand, within GFF855 at 163.347 kb on + strand, within GFF855 at 163.347 kb on + strand, within GFF855 at 163.347 kb on + strand, within GFF855 at 163.347 kb on + strand, within GFF855 at 163.347 kb on + strand, within GFF855 at 163.348 kb on - strand, within GFF855 at 163.348 kb on - strand, within GFF855 at 163.540 kb on - strand at 163.560 kb on + strand at 163.599 kb on + strand at 163.600 kb on - strand at 163.728 kb on + strand, within GFF856 at 163.729 kb on - strand, within GFF856 at 163.790 kb on - strand, within GFF856 at 163.891 kb on - strand, within GFF856 at 164.212 kb on + strand, within GFF857 at 164.218 kb on + strand, within GFF857 at 164.218 kb on + strand, within GFF857 at 164.218 kb on + strand, within GFF857 at 164.218 kb on + strand, within GFF857 at 164.218 kb on + strand, within GFF857 at 164.218 kb on + strand, within GFF857 at 164.218 kb on + strand, within GFF857 at 164.219 kb on - strand, within GFF857 at 164.219 kb on - strand, within GFF857 at 164.219 kb on - strand, within GFF857 at 164.222 kb on + strand, within GFF857 at 164.223 kb on - strand, within GFF857
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 162,102 + GFF853 0.83 +0.5 162,389 + GFF854 0.15 +0.3 162,465 - GFF854 0.29 -0.6 162,621 + GFF854 0.56 -3.0 162,621 + GFF854 0.56 -2.2 162,791 + GFF854 0.86 +0.5 162,791 + GFF854 0.86 +0.3 162,883 + -1.2 162,883 + +2.4 162,883 + -0.7 162,884 - +0.2 163,254 + GFF855 0.51 +1.7 163,254 + GFF855 0.51 +0.1 163,255 - GFF855 0.52 +1.0 163,347 + GFF855 0.65 +2.0 163,347 + GFF855 0.65 -1.1 163,347 + GFF855 0.65 +1.9 163,347 + GFF855 0.65 +2.5 163,347 + GFF855 0.65 -2.7 163,348 - GFF855 0.65 -1.4 163,348 - GFF855 0.65 -1.5 163,540 - -0.8 163,560 + -1.1 163,599 + -1.6 163,600 - -4.0 163,728 + GFF856 0.26 -2.9 163,729 - GFF856 0.26 +0.6 163,790 - GFF856 0.39 +0.1 163,891 - GFF856 0.59 -4.3 164,212 + GFF857 0.11 +1.0 164,218 + GFF857 0.12 -2.6 164,218 + GFF857 0.12 +0.6 164,218 + GFF857 0.12 +1.0 164,218 + GFF857 0.12 +0.8 164,218 + GFF857 0.12 -0.1 164,218 + GFF857 0.12 +0.6 164,218 + GFF857 0.12 -0.6 164,219 - GFF857 0.12 +2.3 164,219 - GFF857 0.12 -1.8 164,219 - GFF857 0.12 -2.4 164,222 + GFF857 0.12 -2.6 164,223 - GFF857 0.12 +0.8
Or see this region's nucleotide sequence