Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF776 and GFF777 are separated by 778 nucleotides GFF777 and GFF778 are separated by 82 nucleotides
GFF776 - Putative large exoprotein involved in heme utilization or adhesion of ShlA/HecA/FhaA family, at 49,170 to 57,995
GFF776
GFF777 - no description, at 58,774 to 59,028
GFF777
GFF778 - Channel-forming transporter/cytolysins activator of TpsB family, at 59,111 to 60,865
GFF778
Position (kb) 58
59
60 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 57.866 kb on + strand at 57.867 kb on - strand at 57.867 kb on - strand at 57.867 kb on - strand at 57.927 kb on - strand at 57.930 kb on - strand at 57.932 kb on + strand at 57.933 kb on - strand at 57.933 kb on - strand at 57.933 kb on - strand at 57.939 kb on - strand at 58.033 kb on - strand at 58.471 kb on + strand at 58.614 kb on + strand at 58.669 kb on + strand at 58.669 kb on + strand at 58.670 kb on - strand at 58.773 kb on + strand at 58.773 kb on + strand at 58.773 kb on + strand at 58.774 kb on - strand at 58.774 kb on - strand at 58.774 kb on - strand at 58.774 kb on - strand at 58.774 kb on - strand at 58.774 kb on - strand at 58.780 kb on + strand at 58.780 kb on + strand at 58.781 kb on - strand at 58.781 kb on - strand at 58.781 kb on - strand at 58.781 kb on - strand at 58.858 kb on + strand, within GFF777 at 58.859 kb on - strand, within GFF777 at 58.859 kb on - strand, within GFF777 at 58.859 kb on - strand, within GFF777 at 58.885 kb on + strand, within GFF777 at 58.885 kb on + strand, within GFF777 at 58.885 kb on + strand, within GFF777 at 58.886 kb on - strand, within GFF777 at 58.886 kb on - strand, within GFF777 at 58.886 kb on - strand, within GFF777 at 58.894 kb on + strand, within GFF777 at 58.894 kb on + strand, within GFF777 at 58.894 kb on + strand, within GFF777 at 58.894 kb on + strand, within GFF777 at 58.894 kb on + strand, within GFF777 at 58.895 kb on - strand, within GFF777 at 58.895 kb on - strand, within GFF777 at 58.895 kb on - strand, within GFF777 at 58.895 kb on - strand, within GFF777 at 58.969 kb on + strand, within GFF777 at 58.969 kb on + strand, within GFF777 at 58.969 kb on + strand, within GFF777 at 58.969 kb on + strand, within GFF777 at 58.970 kb on - strand, within GFF777 at 59.096 kb on + strand at 59.096 kb on + strand at 59.096 kb on + strand at 59.097 kb on - strand at 59.151 kb on + strand at 59.169 kb on + strand at 59.169 kb on + strand at 59.169 kb on + strand at 59.170 kb on - strand at 59.170 kb on - strand at 59.206 kb on + strand at 59.206 kb on + strand at 59.206 kb on + strand at 59.223 kb on + strand at 59.270 kb on + strand at 59.270 kb on + strand at 59.271 kb on - strand at 59.279 kb on - strand at 59.523 kb on - strand, within GFF778 at 59.825 kb on + strand, within GFF778 at 59.825 kb on + strand, within GFF778 at 59.825 kb on + strand, within GFF778 at 59.826 kb on - strand, within GFF778 at 59.826 kb on - strand, within GFF778 at 59.826 kb on - strand, within GFF778 at 59.826 kb on - strand, within GFF778 at 59.848 kb on + strand, within GFF778 at 59.848 kb on + strand, within GFF778 at 59.848 kb on + strand, within GFF778 at 59.849 kb on - strand, within GFF778 at 59.849 kb on - strand, within GFF778 at 59.952 kb on - strand, within GFF778
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 57,866 + -1.1 57,867 - +0.6 57,867 - -0.8 57,867 - -0.1 57,927 - +2.2 57,930 - -1.0 57,932 + -3.5 57,933 - -0.9 57,933 - +0.2 57,933 - -3.7 57,939 - +2.1 58,033 - -0.4 58,471 + -0.5 58,614 + -0.1 58,669 + -2.5 58,669 + -0.5 58,670 - -1.1 58,773 + +0.8 58,773 + -2.2 58,773 + +1.4 58,774 - +0.6 58,774 - -2.1 58,774 - -1.1 58,774 - -0.1 58,774 - -2.4 58,774 - -1.1 58,780 + -0.2 58,780 + +1.4 58,781 - +0.2 58,781 - +1.6 58,781 - -1.5 58,781 - +0.8 58,858 + GFF777 0.33 -0.1 58,859 - GFF777 0.33 -0.9 58,859 - GFF777 0.33 -0.7 58,859 - GFF777 0.33 -2.8 58,885 + GFF777 0.44 -2.8 58,885 + GFF777 0.44 +0.5 58,885 + GFF777 0.44 -0.5 58,886 - GFF777 0.44 -0.0 58,886 - GFF777 0.44 -0.2 58,886 - GFF777 0.44 -1.3 58,894 + GFF777 0.47 +1.0 58,894 + GFF777 0.47 -0.7 58,894 + GFF777 0.47 +0.2 58,894 + GFF777 0.47 -1.8 58,894 + GFF777 0.47 -2.2 58,895 - GFF777 0.47 -0.1 58,895 - GFF777 0.47 -0.9 58,895 - GFF777 0.47 -2.1 58,895 - GFF777 0.47 -0.1 58,969 + GFF777 0.76 -0.8 58,969 + GFF777 0.76 -2.9 58,969 + GFF777 0.76 -0.1 58,969 + GFF777 0.76 -0.5 58,970 - GFF777 0.77 -2.4 59,096 + -2.6 59,096 + -1.9 59,096 + -1.5 59,097 - +0.5 59,151 + -0.2 59,169 + -1.8 59,169 + -0.6 59,169 + -0.7 59,170 - -0.4 59,170 - -0.8 59,206 + -3.0 59,206 + -0.5 59,206 + -1.8 59,223 + -2.0 59,270 + -3.0 59,270 + -1.3 59,271 - -0.3 59,279 - +1.4 59,523 - GFF778 0.23 -0.8 59,825 + GFF778 0.41 -1.3 59,825 + GFF778 0.41 -2.0 59,825 + GFF778 0.41 -0.7 59,826 - GFF778 0.41 +0.7 59,826 - GFF778 0.41 -1.9 59,826 - GFF778 0.41 +0.6 59,826 - GFF778 0.41 -0.3 59,848 + GFF778 0.42 -2.0 59,848 + GFF778 0.42 -2.8 59,848 + GFF778 0.42 -2.5 59,849 - GFF778 0.42 -1.7 59,849 - GFF778 0.42 -0.3 59,952 - GFF778 0.48 +1.0
Or see this region's nucleotide sequence