Strain Fitness in Variovorax sp. SCN45 around GFF7358

Experiment: Community=arabino-guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF7356 and GFF7357 overlap by 4 nucleotidesGFF7357 and GFF7358 overlap by 17 nucleotidesGFF7358 and GFF7359 overlap by 8 nucleotidesGFF7359 and GFF7360 are separated by 31 nucleotides GFF7356 - Branched-chain amino acid ABC transporter, ATP-binding protein LivF (TC 3.A.1.4.1), at 4,426 to 5,151 GFF7356 GFF7357 - Phenylacetate ABC transporter, ATP-binding protein 1, at 5,148 to 5,912 GFF7357 GFF7358 - Phenylacetate ABC transporter, permease protein 2, at 5,896 to 6,864 GFF7358 GFF7359 - High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1), at 6,857 to 7,729 GFF7359 GFF7360 - Urea ABC transporter, substrate-binding protein UrtA, at 7,761 to 8,900 GFF7360 Position (kb) 5 6 7Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 5.074 kb on + strand, within GFF7356at 5.102 kb on + strandat 5.167 kb on + strandat 5.167 kb on + strandat 5.168 kb on - strandat 5.449 kb on + strand, within GFF7357at 5.450 kb on - strand, within GFF7357at 5.753 kb on - strand, within GFF7357at 6.014 kb on + strand, within GFF7358at 6.014 kb on + strand, within GFF7358at 6.015 kb on - strand, within GFF7358at 6.015 kb on - strand, within GFF7358at 6.203 kb on + strand, within GFF7358at 6.204 kb on - strand, within GFF7358at 6.204 kb on - strand, within GFF7358at 6.518 kb on + strand, within GFF7358at 6.519 kb on - strand, within GFF7358at 6.644 kb on + strand, within GFF7358at 6.695 kb on + strand, within GFF7358at 6.712 kb on - strand, within GFF7358at 6.734 kb on + strand, within GFF7358at 6.735 kb on - strand, within GFF7358at 6.742 kb on + strand, within GFF7358at 6.742 kb on + strand, within GFF7358at 6.743 kb on - strand, within GFF7358at 6.949 kb on - strand, within GFF7359at 6.949 kb on - strand, within GFF7359at 6.949 kb on - strand, within GFF7359at 6.961 kb on + strand, within GFF7359at 6.961 kb on + strand, within GFF7359at 6.962 kb on - strand, within GFF7359at 6.962 kb on - strand, within GFF7359at 6.962 kb on - strand, within GFF7359at 6.962 kb on - strand, within GFF7359at 6.962 kb on - strand, within GFF7359at 6.963 kb on + strand, within GFF7359at 6.964 kb on - strand, within GFF7359at 7.089 kb on + strand, within GFF7359at 7.089 kb on + strand, within GFF7359at 7.274 kb on + strand, within GFF7359at 7.274 kb on + strand, within GFF7359at 7.274 kb on + strand, within GFF7359at 7.275 kb on - strand, within GFF7359at 7.275 kb on - strand, within GFF7359at 7.275 kb on - strand, within GFF7359at 7.275 kb on - strand, within GFF7359at 7.291 kb on + strand, within GFF7359at 7.292 kb on - strand, within GFF7359at 7.415 kb on + strand, within GFF7359at 7.502 kb on + strand, within GFF7359at 7.502 kb on + strand, within GFF7359at 7.595 kb on + strand, within GFF7359at 7.595 kb on + strand, within GFF7359at 7.596 kb on - strand, within GFF7359at 7.644 kb on + strandat 7.644 kb on + strandat 7.644 kb on + strandat 7.644 kb on + strandat 7.644 kb on + strandat 7.645 kb on - strandat 7.645 kb on - strandat 7.677 kb on + strandat 7.677 kb on + strandat 7.762 kb on + strandat 7.762 kb on + strandat 7.763 kb on - strandat 7.763 kb on - strandat 7.804 kb on + strandat 7.805 kb on - strandat 7.852 kb on + strandat 7.853 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4
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5,074 + GFF7356 0.89 +1.5
5,102 + -0.2
5,167 + +0.8
5,167 + -1.2
5,168 - -0.8
5,449 + GFF7357 0.39 +0.8
5,450 - GFF7357 0.39 -1.2
5,753 - GFF7357 0.79 -0.1
6,014 + GFF7358 0.12 +0.5
6,014 + GFF7358 0.12 +0.5
6,015 - GFF7358 0.12 +0.3
6,015 - GFF7358 0.12 -1.7
6,203 + GFF7358 0.32 +2.7
6,204 - GFF7358 0.32 +0.5
6,204 - GFF7358 0.32 +0.8
6,518 + GFF7358 0.64 +0.3
6,519 - GFF7358 0.64 -0.0
6,644 + GFF7358 0.77 +1.3
6,695 + GFF7358 0.82 +0.7
6,712 - GFF7358 0.84 -0.0
6,734 + GFF7358 0.86 -1.2
6,735 - GFF7358 0.87 +0.3
6,742 + GFF7358 0.87 -0.3
6,742 + GFF7358 0.87 -0.5
6,743 - GFF7358 0.87 -0.5
6,949 - GFF7359 0.11 -0.1
6,949 - GFF7359 0.11 +0.3
6,949 - GFF7359 0.11 -1.0
6,961 + GFF7359 0.12 +1.3
6,961 + GFF7359 0.12 -1.4
6,962 - GFF7359 0.12 -2.1
6,962 - GFF7359 0.12 +0.4
6,962 - GFF7359 0.12 +3.2
6,962 - GFF7359 0.12 +0.4
6,962 - GFF7359 0.12 +0.3
6,963 + GFF7359 0.12 +0.7
6,964 - GFF7359 0.12 +0.5
7,089 + GFF7359 0.27 +0.2
7,089 + GFF7359 0.27 -0.4
7,274 + GFF7359 0.48 +0.5
7,274 + GFF7359 0.48 +0.5
7,274 + GFF7359 0.48 -1.0
7,275 - GFF7359 0.48 -1.8
7,275 - GFF7359 0.48 -2.9
7,275 - GFF7359 0.48 -0.9
7,275 - GFF7359 0.48 -3.3
7,291 + GFF7359 0.50 +1.2
7,292 - GFF7359 0.50 +0.3
7,415 + GFF7359 0.64 +0.3
7,502 + GFF7359 0.74 +0.6
7,502 + GFF7359 0.74 -1.1
7,595 + GFF7359 0.85 -0.4
7,595 + GFF7359 0.85 -1.5
7,596 - GFF7359 0.85 +0.3
7,644 + -2.1
7,644 + -1.5
7,644 + -0.5
7,644 + -0.6
7,644 + -1.2
7,645 - -0.1
7,645 - +0.1
7,677 + +0.2
7,677 + +0.3
7,762 + -1.4
7,762 + -0.1
7,763 - -1.5
7,763 - -2.5
7,804 + -0.9
7,805 - -0.4
7,852 + -1.4
7,853 - -1.2

Or see this region's nucleotide sequence