Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF7272 and GFF7273 are separated by 367 nucleotides GFF7273 and GFF7274 overlap by 4 nucleotides
GFF7272 - D-glucarate permease, at 20,907 to 22,256
GFF7272
GFF7273 - UDP-glucose 4-epimerase (EC 5.1.3.2), at 22,624 to 23,481
GFF7273
GFF7274 - hypothetical protein, at 23,478 to 24,575
GFF7274
Position (kb) 22
23
24 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 21.703 kb on + strand, within GFF7272 at 21.704 kb on - strand, within GFF7272 at 21.818 kb on - strand, within GFF7272 at 21.818 kb on - strand, within GFF7272 at 22.087 kb on + strand, within GFF7272 at 22.087 kb on + strand, within GFF7272 at 22.088 kb on - strand, within GFF7272 at 22.250 kb on + strand at 22.250 kb on + strand at 22.251 kb on - strand at 22.449 kb on - strand at 22.659 kb on - strand at 22.939 kb on + strand, within GFF7273 at 22.940 kb on - strand, within GFF7273 at 23.080 kb on + strand, within GFF7273 at 23.081 kb on - strand, within GFF7273 at 23.081 kb on - strand, within GFF7273 at 23.081 kb on - strand, within GFF7273 at 23.266 kb on + strand, within GFF7273 at 23.285 kb on - strand, within GFF7273 at 23.296 kb on + strand, within GFF7273 at 23.457 kb on + strand at 23.873 kb on - strand, within GFF7274 at 24.223 kb on - strand, within GFF7274 at 24.410 kb on - strand, within GFF7274 at 24.436 kb on + strand, within GFF7274 at 24.437 kb on - strand, within GFF7274 at 24.438 kb on + strand, within GFF7274 at 24.438 kb on + strand, within GFF7274 at 24.439 kb on - strand, within GFF7274
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 21,703 + GFF7272 0.59 +0.6 21,704 - GFF7272 0.59 -1.8 21,818 - GFF7272 0.67 -1.7 21,818 - GFF7272 0.67 -0.3 22,087 + GFF7272 0.87 +0.8 22,087 + GFF7272 0.87 +0.5 22,088 - GFF7272 0.87 -2.8 22,250 + -0.9 22,250 + -2.1 22,251 - -0.0 22,449 - +0.6 22,659 - +1.3 22,939 + GFF7273 0.37 +0.4 22,940 - GFF7273 0.37 -1.5 23,080 + GFF7273 0.53 -4.3 23,081 - GFF7273 0.53 -1.0 23,081 - GFF7273 0.53 -1.1 23,081 - GFF7273 0.53 -0.4 23,266 + GFF7273 0.75 -0.0 23,285 - GFF7273 0.77 -3.3 23,296 + GFF7273 0.78 -0.8 23,457 + -3.6 23,873 - GFF7274 0.36 +1.8 24,223 - GFF7274 0.68 -1.2 24,410 - GFF7274 0.85 +0.1 24,436 + GFF7274 0.87 +1.0 24,437 - GFF7274 0.87 -1.1 24,438 + GFF7274 0.87 -1.5 24,438 + GFF7274 0.87 -0.3 24,439 - GFF7274 0.88 -3.0
Or see this region's nucleotide sequence