Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF719 and GFF720 are separated by 15 nucleotides GFF720 and GFF721 overlap by 4 nucleotides GFF721 and GFF722 overlap by 4 nucleotides GFF722 and GFF723 are separated by 76 nucleotides GFF723 and GFF724 overlap by 4 nucleotides
GFF719 - no description, at 777,596 to 778,591
GFF719
GFF720 - no description, at 778,607 to 778,771
GFF720
GFF721 - O-acetyl-ADP-ribose deacetylase, at 778,768 to 779,274
GFF721
GFF722 - hypothetical protein, at 779,271 to 780,047
GFF722
GFF723 - RNA polymerase ECF-type sigma factor, at 780,124 to 780,633
GFF723
GFF724 - Fe2+-dicitrate sensor, membrane component, at 780,630 to 781,622
GFF724
Position (kb) 779
780
781 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 778.288 kb on - strand, within GFF719 at 778.317 kb on + strand, within GFF719 at 778.318 kb on - strand, within GFF719 at 778.479 kb on + strand, within GFF719 at 778.479 kb on + strand, within GFF719 at 778.480 kb on - strand, within GFF719 at 778.480 kb on - strand, within GFF719 at 778.480 kb on - strand, within GFF719 at 778.668 kb on + strand, within GFF720 at 778.668 kb on + strand, within GFF720 at 778.668 kb on + strand, within GFF720 at 778.668 kb on + strand, within GFF720 at 778.735 kb on + strand, within GFF720 at 778.735 kb on + strand, within GFF720 at 778.735 kb on + strand, within GFF720 at 778.736 kb on - strand, within GFF720 at 778.995 kb on + strand, within GFF721 at 778.995 kb on + strand, within GFF721 at 778.996 kb on - strand, within GFF721 at 778.996 kb on - strand, within GFF721 at 778.996 kb on - strand, within GFF721 at 778.996 kb on - strand, within GFF721 at 779.131 kb on + strand, within GFF721 at 779.131 kb on + strand, within GFF721 at 779.131 kb on + strand, within GFF721 at 779.131 kb on + strand, within GFF721 at 779.131 kb on + strand, within GFF721 at 779.131 kb on + strand, within GFF721 at 779.131 kb on + strand, within GFF721 at 779.131 kb on + strand, within GFF721 at 779.132 kb on - strand, within GFF721 at 779.132 kb on - strand, within GFF721 at 779.132 kb on - strand, within GFF721 at 779.132 kb on - strand, within GFF721 at 779.132 kb on - strand, within GFF721 at 779.132 kb on - strand, within GFF721 at 779.132 kb on - strand, within GFF721 at 779.132 kb on - strand, within GFF721 at 779.132 kb on - strand, within GFF721 at 779.132 kb on - strand, within GFF721 at 779.132 kb on - strand, within GFF721 at 779.132 kb on - strand, within GFF721 at 779.177 kb on + strand, within GFF721 at 779.178 kb on - strand, within GFF721 at 779.255 kb on - strand at 779.286 kb on + strand at 779.287 kb on - strand at 779.287 kb on - strand at 779.319 kb on + strand at 779.730 kb on + strand, within GFF722 at 779.731 kb on - strand, within GFF722 at 779.731 kb on - strand, within GFF722 at 779.731 kb on - strand, within GFF722 at 779.850 kb on + strand, within GFF722 at 779.850 kb on + strand, within GFF722 at 779.850 kb on + strand, within GFF722 at 779.850 kb on + strand, within GFF722 at 779.850 kb on + strand, within GFF722 at 779.851 kb on - strand, within GFF722 at 779.851 kb on - strand, within GFF722 at 779.925 kb on + strand, within GFF722 at 779.926 kb on - strand, within GFF722 at 779.926 kb on - strand, within GFF722 at 779.928 kb on + strand, within GFF722 at 779.928 kb on + strand, within GFF722 at 779.928 kb on + strand, within GFF722 at 779.929 kb on - strand, within GFF722 at 779.929 kb on - strand, within GFF722 at 779.929 kb on - strand, within GFF722 at 779.929 kb on - strand, within GFF722 at 779.929 kb on - strand, within GFF722 at 779.929 kb on - strand, within GFF722 at 779.929 kb on - strand, within GFF722 at 780.169 kb on + strand at 780.169 kb on + strand at 780.169 kb on + strand at 780.169 kb on + strand at 780.170 kb on - strand at 780.170 kb on - strand at 780.170 kb on - strand at 780.284 kb on + strand, within GFF723 at 780.284 kb on + strand, within GFF723 at 780.285 kb on - strand, within GFF723 at 780.285 kb on - strand, within GFF723 at 780.285 kb on - strand, within GFF723 at 780.313 kb on + strand, within GFF723 at 780.313 kb on + strand, within GFF723 at 780.313 kb on + strand, within GFF723 at 780.538 kb on + strand, within GFF723 at 780.539 kb on - strand, within GFF723 at 780.539 kb on - strand, within GFF723 at 780.539 kb on - strand, within GFF723 at 780.589 kb on + strand at 780.589 kb on + strand at 780.590 kb on - strand at 780.590 kb on - strand at 780.590 kb on - strand at 780.590 kb on - strand at 780.927 kb on + strand, within GFF724 at 780.928 kb on - strand, within GFF724
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 778,288 - GFF719 0.69 -0.2 778,317 + GFF719 0.72 +2.7 778,318 - GFF719 0.72 -0.7 778,479 + GFF719 0.89 -3.2 778,479 + GFF719 0.89 -1.0 778,480 - GFF719 0.89 +1.5 778,480 - GFF719 0.89 +0.9 778,480 - GFF719 0.89 -1.5 778,668 + GFF720 0.37 -0.3 778,668 + GFF720 0.37 -2.0 778,668 + GFF720 0.37 +0.8 778,668 + GFF720 0.37 -2.0 778,735 + GFF720 0.78 +0.1 778,735 + GFF720 0.78 +0.9 778,735 + GFF720 0.78 +0.3 778,736 - GFF720 0.78 -0.7 778,995 + GFF721 0.45 -0.6 778,995 + GFF721 0.45 -3.5 778,996 - GFF721 0.45 -1.2 778,996 - GFF721 0.45 +0.3 778,996 - GFF721 0.45 +1.5 778,996 - GFF721 0.45 +3.3 779,131 + GFF721 0.72 -2.7 779,131 + GFF721 0.72 -2.6 779,131 + GFF721 0.72 -0.9 779,131 + GFF721 0.72 -1.7 779,131 + GFF721 0.72 -2.6 779,131 + GFF721 0.72 -0.5 779,131 + GFF721 0.72 -2.6 779,131 + GFF721 0.72 -1.5 779,132 - GFF721 0.72 +1.9 779,132 - GFF721 0.72 -0.0 779,132 - GFF721 0.72 -0.5 779,132 - GFF721 0.72 +0.6 779,132 - GFF721 0.72 +1.3 779,132 - GFF721 0.72 +2.2 779,132 - GFF721 0.72 -1.1 779,132 - GFF721 0.72 -1.7 779,132 - GFF721 0.72 +0.3 779,132 - GFF721 0.72 -0.4 779,132 - GFF721 0.72 +1.3 779,132 - GFF721 0.72 -1.0 779,177 + GFF721 0.81 -4.1 779,178 - GFF721 0.81 +1.3 779,255 - +0.7 779,286 + -2.4 779,287 - +0.5 779,287 - -4.6 779,319 + -1.2 779,730 + GFF722 0.59 -1.1 779,731 - GFF722 0.59 -0.3 779,731 - GFF722 0.59 -2.3 779,731 - GFF722 0.59 -2.0 779,850 + GFF722 0.75 -0.9 779,850 + GFF722 0.75 -0.8 779,850 + GFF722 0.75 -1.0 779,850 + GFF722 0.75 -1.0 779,850 + GFF722 0.75 +1.2 779,851 - GFF722 0.75 -0.4 779,851 - GFF722 0.75 -0.2 779,925 + GFF722 0.84 +0.1 779,926 - GFF722 0.84 -0.3 779,926 - GFF722 0.84 +0.9 779,928 + GFF722 0.85 -1.7 779,928 + GFF722 0.85 +1.5 779,928 + GFF722 0.85 +0.1 779,929 - GFF722 0.85 -2.5 779,929 - GFF722 0.85 -1.4 779,929 - GFF722 0.85 -1.3 779,929 - GFF722 0.85 -1.9 779,929 - GFF722 0.85 -0.3 779,929 - GFF722 0.85 -0.2 779,929 - GFF722 0.85 +0.7 780,169 + +1.1 780,169 + +0.3 780,169 + -1.1 780,169 + +3.3 780,170 - +0.5 780,170 - +1.2 780,170 - +0.5 780,284 + GFF723 0.31 -0.7 780,284 + GFF723 0.31 +0.5 780,285 - GFF723 0.32 -1.1 780,285 - GFF723 0.32 +1.0 780,285 - GFF723 0.32 -0.1 780,313 + GFF723 0.37 -0.5 780,313 + GFF723 0.37 +0.4 780,313 + GFF723 0.37 +1.2 780,538 + GFF723 0.81 -0.5 780,539 - GFF723 0.81 +0.6 780,539 - GFF723 0.81 -0.2 780,539 - GFF723 0.81 +0.4 780,589 + +1.1 780,589 + -1.5 780,590 - +0.3 780,590 - -4.2 780,590 - -2.4 780,590 - +0.3 780,927 + GFF724 0.30 +1.3 780,928 - GFF724 0.30 +0.7
Or see this region's nucleotide sequence