Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF7193 and GFF7194 overlap by 4 nucleotides GFF7194 and GFF7195 overlap by 4 nucleotides GFF7195 and GFF7196 overlap by 4 nucleotides GFF7196 and GFF7197 are separated by 10 nucleotides
GFF7193 - ABC transporter, permease protein 1 (cluster 5, nickel/peptides/opines), at 11,288 to 12,325
GFF7193
GFF7194 - ABC transporter, permease protein 2 (cluster 5, nickel/peptides/opines), at 12,322 to 13,164
GFF7194
GFF7195 - Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1), at 13,161 to 14,174
GFF7195
GFF7196 - Oxygen-insensitive NADPH nitroreductase (EC 1.-.-.-), at 14,171 to 15,022
GFF7196
GFF7197 - KEGG: peptide/nickel transport system ATP-binding protein, at 15,033 to 15,869
GFF7197
Position (kb) 13
14
15 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 12.182 kb on + strand, within GFF7193 at 12.182 kb on + strand, within GFF7193 at 12.182 kb on + strand, within GFF7193 at 12.182 kb on + strand, within GFF7193 at 12.183 kb on - strand, within GFF7193 at 12.183 kb on - strand, within GFF7193 at 12.183 kb on - strand, within GFF7193 at 12.446 kb on + strand, within GFF7194 at 12.446 kb on + strand, within GFF7194 at 12.447 kb on - strand, within GFF7194 at 12.769 kb on + strand, within GFF7194 at 12.769 kb on + strand, within GFF7194 at 12.770 kb on - strand, within GFF7194 at 12.770 kb on - strand, within GFF7194 at 12.817 kb on + strand, within GFF7194 at 12.818 kb on - strand, within GFF7194 at 13.024 kb on + strand, within GFF7194 at 13.024 kb on + strand, within GFF7194 at 13.024 kb on + strand, within GFF7194 at 13.025 kb on - strand, within GFF7194 at 13.025 kb on - strand, within GFF7194 at 13.025 kb on - strand, within GFF7194 at 13.025 kb on - strand, within GFF7194 at 13.532 kb on - strand, within GFF7195 at 13.923 kb on + strand, within GFF7195 at 14.573 kb on + strand, within GFF7196 at 14.666 kb on + strand, within GFF7196 at 14.666 kb on + strand, within GFF7196 at 14.667 kb on - strand, within GFF7196 at 14.867 kb on + strand, within GFF7196 at 14.868 kb on - strand, within GFF7196 at 14.868 kb on - strand, within GFF7196 at 14.891 kb on + strand, within GFF7196 at 14.892 kb on - strand, within GFF7196 at 14.892 kb on - strand, within GFF7196
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 12,182 + GFF7193 0.86 +1.8 12,182 + GFF7193 0.86 -0.5 12,182 + GFF7193 0.86 +2.2 12,182 + GFF7193 0.86 +0.4 12,183 - GFF7193 0.86 -3.6 12,183 - GFF7193 0.86 -2.4 12,183 - GFF7193 0.86 -0.1 12,446 + GFF7194 0.15 -0.8 12,446 + GFF7194 0.15 +2.1 12,447 - GFF7194 0.15 +0.0 12,769 + GFF7194 0.53 +0.2 12,769 + GFF7194 0.53 +0.8 12,770 - GFF7194 0.53 -0.3 12,770 - GFF7194 0.53 -1.7 12,817 + GFF7194 0.59 -3.3 12,818 - GFF7194 0.59 -0.5 13,024 + GFF7194 0.83 -2.0 13,024 + GFF7194 0.83 -0.1 13,024 + GFF7194 0.83 -1.7 13,025 - GFF7194 0.83 +0.1 13,025 - GFF7194 0.83 -2.7 13,025 - GFF7194 0.83 +0.2 13,025 - GFF7194 0.83 +2.5 13,532 - GFF7195 0.37 -0.2 13,923 + GFF7195 0.75 +1.4 14,573 + GFF7196 0.47 +0.9 14,666 + GFF7196 0.58 -1.4 14,666 + GFF7196 0.58 -0.2 14,667 - GFF7196 0.58 -1.2 14,867 + GFF7196 0.82 -1.4 14,868 - GFF7196 0.82 -3.4 14,868 - GFF7196 0.82 +0.2 14,891 + GFF7196 0.85 -0.8 14,892 - GFF7196 0.85 +1.8 14,892 - GFF7196 0.85 +1.1
Or see this region's nucleotide sequence