Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF7106 and GFF7107 overlap by 4 nucleotides GFF7107 and GFF7108 are separated by 101 nucleotides
GFF7106 - BUG/TctC family periplasmic protein, at 23,253 to 24,233
GFF7106
GFF7107 - 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases, at 24,230 to 25,900
GFF7107
GFF7108 - Transcriptional regulator, LysR family, at 26,002 to 26,907
GFF7108
Position (kb) 24
25
26 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 23.283 kb on - strand at 23.283 kb on - strand at 23.283 kb on - strand at 23.317 kb on + strand at 23.317 kb on + strand at 23.317 kb on + strand at 23.317 kb on + strand at 23.317 kb on + strand at 23.317 kb on + strand at 23.318 kb on - strand at 23.318 kb on - strand at 23.318 kb on - strand at 23.318 kb on - strand at 23.318 kb on - strand at 23.318 kb on - strand at 23.318 kb on - strand at 23.318 kb on - strand at 23.400 kb on + strand, within GFF7106 at 23.400 kb on + strand, within GFF7106 at 23.400 kb on + strand, within GFF7106 at 23.400 kb on + strand, within GFF7106 at 23.400 kb on + strand, within GFF7106 at 23.401 kb on - strand, within GFF7106 at 23.401 kb on - strand, within GFF7106 at 23.401 kb on - strand, within GFF7106 at 23.422 kb on + strand, within GFF7106 at 23.423 kb on - strand, within GFF7106 at 23.770 kb on + strand, within GFF7106 at 23.770 kb on + strand, within GFF7106 at 23.770 kb on + strand, within GFF7106 at 23.770 kb on + strand, within GFF7106 at 23.771 kb on - strand, within GFF7106 at 23.771 kb on - strand, within GFF7106 at 23.771 kb on - strand, within GFF7106 at 23.771 kb on - strand, within GFF7106 at 23.771 kb on - strand, within GFF7106 at 23.909 kb on - strand, within GFF7106 at 23.923 kb on + strand, within GFF7106 at 24.209 kb on - strand at 24.260 kb on - strand at 24.347 kb on + strand at 24.347 kb on + strand at 24.347 kb on + strand at 24.348 kb on - strand at 24.348 kb on - strand at 24.348 kb on - strand at 24.366 kb on + strand at 24.366 kb on + strand at 24.483 kb on + strand, within GFF7107 at 24.483 kb on + strand, within GFF7107 at 24.483 kb on + strand, within GFF7107 at 24.483 kb on + strand, within GFF7107 at 24.483 kb on + strand, within GFF7107 at 24.484 kb on - strand, within GFF7107 at 24.484 kb on - strand, within GFF7107 at 24.585 kb on + strand, within GFF7107 at 24.586 kb on - strand, within GFF7107 at 24.586 kb on - strand, within GFF7107 at 24.586 kb on - strand, within GFF7107 at 24.586 kb on - strand, within GFF7107 at 24.586 kb on - strand, within GFF7107 at 24.586 kb on - strand, within GFF7107 at 24.609 kb on + strand, within GFF7107 at 24.610 kb on - strand, within GFF7107 at 24.633 kb on + strand, within GFF7107 at 24.633 kb on + strand, within GFF7107 at 24.633 kb on + strand, within GFF7107 at 24.634 kb on - strand, within GFF7107 at 24.634 kb on - strand, within GFF7107 at 24.634 kb on - strand, within GFF7107 at 24.634 kb on - strand, within GFF7107 at 24.634 kb on - strand, within GFF7107 at 24.636 kb on + strand, within GFF7107 at 24.636 kb on + strand, within GFF7107 at 24.636 kb on + strand, within GFF7107 at 24.636 kb on + strand, within GFF7107 at 24.636 kb on + strand, within GFF7107 at 24.636 kb on + strand, within GFF7107 at 24.636 kb on + strand, within GFF7107 at 24.636 kb on + strand, within GFF7107 at 24.636 kb on + strand, within GFF7107 at 24.636 kb on + strand, within GFF7107 at 24.637 kb on - strand, within GFF7107 at 24.637 kb on - strand, within GFF7107 at 24.637 kb on - strand, within GFF7107 at 24.637 kb on - strand, within GFF7107 at 24.637 kb on - strand, within GFF7107 at 24.640 kb on - strand, within GFF7107 at 24.666 kb on + strand, within GFF7107 at 24.666 kb on + strand, within GFF7107 at 24.666 kb on + strand, within GFF7107 at 24.667 kb on - strand, within GFF7107 at 24.687 kb on + strand, within GFF7107 at 24.687 kb on + strand, within GFF7107 at 24.687 kb on + strand, within GFF7107 at 24.688 kb on - strand, within GFF7107 at 24.688 kb on - strand, within GFF7107 at 24.688 kb on - strand, within GFF7107 at 24.821 kb on - strand, within GFF7107 at 24.823 kb on + strand, within GFF7107 at 24.823 kb on + strand, within GFF7107 at 24.823 kb on + strand, within GFF7107 at 24.823 kb on + strand, within GFF7107 at 24.824 kb on - strand, within GFF7107 at 24.824 kb on - strand, within GFF7107 at 24.824 kb on - strand, within GFF7107 at 24.843 kb on + strand, within GFF7107 at 24.843 kb on + strand, within GFF7107 at 24.843 kb on + strand, within GFF7107 at 24.843 kb on + strand, within GFF7107 at 24.844 kb on - strand, within GFF7107 at 24.902 kb on + strand, within GFF7107 at 24.902 kb on + strand, within GFF7107 at 24.902 kb on + strand, within GFF7107 at 24.903 kb on - strand, within GFF7107 at 24.940 kb on - strand, within GFF7107 at 24.940 kb on - strand, within GFF7107 at 25.143 kb on + strand, within GFF7107 at 25.143 kb on + strand, within GFF7107 at 25.143 kb on + strand, within GFF7107 at 25.143 kb on + strand, within GFF7107 at 25.143 kb on + strand, within GFF7107 at 25.143 kb on + strand, within GFF7107 at 25.144 kb on - strand, within GFF7107 at 25.144 kb on - strand, within GFF7107 at 25.144 kb on - strand, within GFF7107 at 25.144 kb on - strand, within GFF7107 at 25.144 kb on - strand, within GFF7107 at 25.182 kb on + strand, within GFF7107 at 25.182 kb on + strand, within GFF7107 at 25.182 kb on + strand, within GFF7107 at 25.182 kb on + strand, within GFF7107 at 25.182 kb on + strand, within GFF7107 at 25.183 kb on - strand, within GFF7107 at 25.183 kb on - strand, within GFF7107 at 25.292 kb on + strand, within GFF7107 at 25.292 kb on + strand, within GFF7107 at 25.293 kb on - strand, within GFF7107 at 25.293 kb on - strand, within GFF7107 at 25.368 kb on + strand, within GFF7107 at 25.524 kb on + strand, within GFF7107 at 25.524 kb on + strand, within GFF7107 at 25.524 kb on + strand, within GFF7107 at 25.524 kb on + strand, within GFF7107 at 25.525 kb on - strand, within GFF7107 at 25.525 kb on - strand, within GFF7107 at 25.525 kb on - strand, within GFF7107 at 25.593 kb on + strand, within GFF7107 at 25.593 kb on + strand, within GFF7107 at 25.593 kb on + strand, within GFF7107 at 25.593 kb on + strand, within GFF7107 at 25.594 kb on - strand, within GFF7107 at 25.651 kb on + strand, within GFF7107 at 25.675 kb on - strand, within GFF7107 at 25.808 kb on + strand at 25.808 kb on + strand at 25.808 kb on + strand at 25.809 kb on - strand at 25.809 kb on - strand at 25.809 kb on - strand at 25.809 kb on - strand at 25.809 kb on - strand at 25.809 kb on - strand at 25.956 kb on + strand at 25.956 kb on + strand at 25.957 kb on - strand at 25.957 kb on - strand at 25.957 kb on - strand at 25.957 kb on - strand at 25.984 kb on + strand at 25.986 kb on + strand at 25.997 kb on + strand at 26.050 kb on + strand at 26.050 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 23,283 - -0.8 23,283 - -0.6 23,283 - -1.0 23,317 + -1.4 23,317 + -3.1 23,317 + -2.5 23,317 + +3.3 23,317 + +0.1 23,317 + -0.4 23,318 - +2.4 23,318 - -0.3 23,318 - -1.9 23,318 - -0.9 23,318 - -0.2 23,318 - +0.0 23,318 - +0.0 23,318 - +0.2 23,400 + GFF7106 0.15 -0.5 23,400 + GFF7106 0.15 -0.8 23,400 + GFF7106 0.15 -1.4 23,400 + GFF7106 0.15 +1.6 23,400 + GFF7106 0.15 -3.0 23,401 - GFF7106 0.15 +1.1 23,401 - GFF7106 0.15 -2.4 23,401 - GFF7106 0.15 -1.3 23,422 + GFF7106 0.17 -0.7 23,423 - GFF7106 0.17 -2.1 23,770 + GFF7106 0.53 -1.5 23,770 + GFF7106 0.53 +0.1 23,770 + GFF7106 0.53 +2.2 23,770 + GFF7106 0.53 +1.1 23,771 - GFF7106 0.53 -0.5 23,771 - GFF7106 0.53 +3.1 23,771 - GFF7106 0.53 -2.6 23,771 - GFF7106 0.53 -0.1 23,771 - GFF7106 0.53 -0.6 23,909 - GFF7106 0.67 +0.2 23,923 + GFF7106 0.68 +0.1 24,209 - -2.4 24,260 - -1.3 24,347 + -0.1 24,347 + -1.0 24,347 + -1.7 24,348 - +0.8 24,348 - -1.1 24,348 - +2.6 24,366 + +0.0 24,366 + +0.1 24,483 + GFF7107 0.15 -2.7 24,483 + GFF7107 0.15 +0.5 24,483 + GFF7107 0.15 +3.3 24,483 + GFF7107 0.15 +0.5 24,483 + GFF7107 0.15 -0.6 24,484 - GFF7107 0.15 -3.0 24,484 - GFF7107 0.15 -2.6 24,585 + GFF7107 0.21 +0.3 24,586 - GFF7107 0.21 -0.3 24,586 - GFF7107 0.21 +0.4 24,586 - GFF7107 0.21 -1.1 24,586 - GFF7107 0.21 -0.5 24,586 - GFF7107 0.21 -1.9 24,586 - GFF7107 0.21 -2.5 24,609 + GFF7107 0.23 -0.1 24,610 - GFF7107 0.23 -0.9 24,633 + GFF7107 0.24 +0.6 24,633 + GFF7107 0.24 -0.9 24,633 + GFF7107 0.24 -0.6 24,634 - GFF7107 0.24 -1.7 24,634 - GFF7107 0.24 +0.7 24,634 - GFF7107 0.24 -0.8 24,634 - GFF7107 0.24 +1.9 24,634 - GFF7107 0.24 +1.0 24,636 + GFF7107 0.24 -0.7 24,636 + GFF7107 0.24 -2.4 24,636 + GFF7107 0.24 -1.3 24,636 + GFF7107 0.24 +0.5 24,636 + GFF7107 0.24 +1.9 24,636 + GFF7107 0.24 +0.2 24,636 + GFF7107 0.24 +0.4 24,636 + GFF7107 0.24 +0.1 24,636 + GFF7107 0.24 +1.0 24,636 + GFF7107 0.24 -1.6 24,637 - GFF7107 0.24 +1.8 24,637 - GFF7107 0.24 +0.5 24,637 - GFF7107 0.24 -0.9 24,637 - GFF7107 0.24 +0.8 24,637 - GFF7107 0.24 +0.2 24,640 - GFF7107 0.25 +0.5 24,666 + GFF7107 0.26 -0.6 24,666 + GFF7107 0.26 -0.1 24,666 + GFF7107 0.26 +0.9 24,667 - GFF7107 0.26 +0.9 24,687 + GFF7107 0.27 +2.1 24,687 + GFF7107 0.27 -2.7 24,687 + GFF7107 0.27 -3.0 24,688 - GFF7107 0.27 -1.6 24,688 - GFF7107 0.27 -1.8 24,688 - GFF7107 0.27 -0.7 24,821 - GFF7107 0.35 -0.5 24,823 + GFF7107 0.35 +1.8 24,823 + GFF7107 0.35 -0.7 24,823 + GFF7107 0.35 -0.3 24,823 + GFF7107 0.35 -0.4 24,824 - GFF7107 0.36 -0.6 24,824 - GFF7107 0.36 -0.3 24,824 - GFF7107 0.36 +2.5 24,843 + GFF7107 0.37 +0.1 24,843 + GFF7107 0.37 -1.8 24,843 + GFF7107 0.37 +0.7 24,843 + GFF7107 0.37 -1.3 24,844 - GFF7107 0.37 -0.6 24,902 + GFF7107 0.40 -1.3 24,902 + GFF7107 0.40 -1.7 24,902 + GFF7107 0.40 +3.1 24,903 - GFF7107 0.40 -0.5 24,940 - GFF7107 0.42 +0.5 24,940 - GFF7107 0.42 -0.5 25,143 + GFF7107 0.55 -1.3 25,143 + GFF7107 0.55 -0.4 25,143 + GFF7107 0.55 +0.1 25,143 + GFF7107 0.55 +0.4 25,143 + GFF7107 0.55 +0.3 25,143 + GFF7107 0.55 -1.3 25,144 - GFF7107 0.55 -0.8 25,144 - GFF7107 0.55 -2.8 25,144 - GFF7107 0.55 +0.6 25,144 - GFF7107 0.55 -2.2 25,144 - GFF7107 0.55 -0.2 25,182 + GFF7107 0.57 -1.6 25,182 + GFF7107 0.57 -1.2 25,182 + GFF7107 0.57 +0.8 25,182 + GFF7107 0.57 -1.4 25,182 + GFF7107 0.57 +0.4 25,183 - GFF7107 0.57 +0.8 25,183 - GFF7107 0.57 -0.1 25,292 + GFF7107 0.64 -1.0 25,292 + GFF7107 0.64 -1.4 25,293 - GFF7107 0.64 -1.8 25,293 - GFF7107 0.64 -0.4 25,368 + GFF7107 0.68 +0.4 25,524 + GFF7107 0.77 +0.7 25,524 + GFF7107 0.77 -1.0 25,524 + GFF7107 0.77 +1.3 25,524 + GFF7107 0.77 -0.5 25,525 - GFF7107 0.77 -3.3 25,525 - GFF7107 0.77 +2.2 25,525 - GFF7107 0.77 +0.5 25,593 + GFF7107 0.82 -0.9 25,593 + GFF7107 0.82 +0.7 25,593 + GFF7107 0.82 -0.7 25,593 + GFF7107 0.82 -2.0 25,594 - GFF7107 0.82 -0.5 25,651 + GFF7107 0.85 -2.1 25,675 - GFF7107 0.86 -1.1 25,808 + -1.3 25,808 + -0.3 25,808 + +0.4 25,809 - -1.8 25,809 - -1.5 25,809 - +1.4 25,809 - -0.2 25,809 - -0.9 25,809 - -3.3 25,956 + +2.7 25,956 + -1.4 25,957 - -2.5 25,957 - +0.1 25,957 - -1.2 25,957 - +2.1 25,984 + -1.8 25,986 + +0.5 25,997 + +1.2 26,050 + -0.5 26,050 + +0.5
Or see this region's nucleotide sequence