Strain Fitness in Variovorax sp. SCN45 around GFF7036

Experiment: Community=arabino-guar; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=arabino-guar; Passage=4
917	+		GFF7034	0.57	-2.4
917	+		GFF7034	0.57	-0.5
917	+		GFF7034	0.57	+0.5
918	-		GFF7034	0.57	-0.1
918	-		GFF7034	0.57	-0.8
1,297	+				+2.1
1,297	+				-1.5
1,297	+				-0.8
1,297	+				-3.1
1,297	+				-0.7
1,297	+				-2.9
1,297	+				-0.4
1,297	+				-0.2
1,297	+				+1.4
1,297	+				+1.5
1,298	-				-2.1
1,510	+		GFF7035	0.28	-4.0
1,510	+		GFF7035	0.28	-0.4
1,510	+		GFF7035	0.28	-1.1
1,510	+		GFF7035	0.28	-0.3
1,510	+		GFF7035	0.28	-2.1
1,511	-		GFF7035	0.28	-0.8
1,511	-		GFF7035	0.28	-1.3
1,511	-		GFF7035	0.28	-2.3
1,511	-		GFF7035	0.28	-0.2
1,511	-		GFF7035	0.28	-3.1
1,511	-		GFF7035	0.28	-1.8
1,511	-		GFF7035	0.28	-0.9
1,537	+		GFF7035	0.34	-0.5
1,538	-		GFF7035	0.34	+1.2
1,538	-		GFF7035	0.34	-1.0
1,558	+		GFF7035	0.39	-4.0
1,559	-		GFF7035	0.39	-3.9
1,559	-		GFF7035	0.39	-2.7
1,559	-		GFF7035	0.39	-1.7
1,866	+				-3.7
1,867	-				-3.5
1,867	-				+0.8
1,970	+		GFF7036	0.20	-1.4
1,970	+		GFF7036	0.20	-0.3
1,970	+		GFF7036	0.20	+0.8
2,244	-		GFF7036	0.61	+0.8
2,244	-		GFF7036	0.61	-0.1
2,244	-		GFF7036	0.61	+0.3
2,791	+				-1.3
2,791	+				+1.0
2,791	+				+1.4
2,791	+				+2.0
2,791	+				-1.0
2,791	+				+0.2
2,791	+				-2.1
2,791	+				-1.8
2,791	+				+1.5
2,791	+				+0.5
2,791	+				-3.5
2,791	+				-1.3
2,791	+				-0.8
2,792	-				-0.8
2,792	-				-2.3
2,792	-				+0.5
2,792	-				+1.6
2,792	-				+1.2
2,792	-				-0.2
2,792	-				+0.0
2,792	-				+0.5
2,792	-				-2.2
2,792	-				-0.8
2,792	-				-1.7
2,792	-				-1.7
2,792	-				-1.1
2,792	-				-0.5
2,792	-				+0.2
2,792	-				-0.4
2,792	-				+0.0
2,792	-				-0.8
2,792	-				-0.4
2,792	-				-0.1
2,792	-				-1.1
2,792	-				-3.0
2,792	-				-2.7
2,836	+				-1.6
2,836	+				-3.9
2,881	-		GFF7037	0.14	+0.3
2,881	-		GFF7037	0.14	-0.4
3,190	+		GFF7037	0.39	+0.2
3,190	+		GFF7037	0.39	+0.7
3,191	-		GFF7037	0.39	-0.7
3,191	-		GFF7037	0.39	-2.1
3,247	+		GFF7037	0.44	-0.3
3,247	+		GFF7037	0.44	+0.2
3,247	+		GFF7037	0.44	+0.3
3,248	-		GFF7037	0.44	+0.9
3,248	-		GFF7037	0.44	+0.0
3,253	+		GFF7037	0.45	+0.2
3,253	+		GFF7037	0.45	+0.5
3,253	+		GFF7037	0.45	+0.5
3,253	+		GFF7037	0.45	+0.0
3,254	-		GFF7037	0.45	-1.8
3,254	-		GFF7037	0.45	+0.1
3,254	-		GFF7037	0.45	+1.5
3,254	-		GFF7037	0.45	+0.6
3,254	-		GFF7037	0.45	-0.2
3,400	+		GFF7037	0.57	-2.0
3,400	+		GFF7037	0.57	-0.8
3,400	+		GFF7037	0.57	-3.0
3,400	+		GFF7037	0.57	+0.1
3,400	+		GFF7037	0.57	+0.5
3,400	+		GFF7037	0.57	+1.2
3,401	-		GFF7037	0.57	-0.7
3,401	-		GFF7037	0.57	+1.7
3,401	-		GFF7037	0.57	-0.2