Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6927 and GFF6928 overlap by 1 nucleotides GFF6928 and GFF6929 are separated by 11 nucleotides GFF6929 and GFF6930 are separated by 2 nucleotides GFF6930 and GFF6931 are separated by 428 nucleotides GFF6931 and GFF6932 are separated by 42 nucleotides
GFF6927 - Transcriptional regulator, ArsR family, at 6,734 to 7,057
GFF6927
GFF6928 - Putative transmembrane protein, at 7,057 to 7,491
GFF6928
GFF6929 - GENE II AND X PROTEINS, at 7,503 to 7,925
GFF6929
GFF6930 - no description, at 7,928 to 8,383
GFF6930
GFF6931 - no description, at 8,812 to 9,273
GFF6931
GFF6932 - no description, at 9,316 to 9,939
GFF6932
Position (kb) 7
8
9 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 6.930 kb on + strand, within GFF6927 at 6.930 kb on + strand, within GFF6927 at 6.931 kb on - strand, within GFF6927 at 6.931 kb on - strand, within GFF6927 at 6.931 kb on - strand, within GFF6927 at 6.984 kb on - strand, within GFF6927 at 6.984 kb on - strand, within GFF6927 at 7.028 kb on + strand at 7.029 kb on - strand at 7.037 kb on + strand at 7.037 kb on + strand at 7.037 kb on + strand at 7.037 kb on + strand at 7.037 kb on + strand at 7.261 kb on + strand, within GFF6928 at 7.262 kb on - strand, within GFF6928 at 7.262 kb on - strand, within GFF6928 at 7.262 kb on - strand, within GFF6928 at 7.262 kb on - strand, within GFF6928 at 8.134 kb on - strand, within GFF6930 at 8.239 kb on - strand, within GFF6930 at 8.821 kb on + strand at 8.960 kb on + strand, within GFF6931 at 8.960 kb on + strand, within GFF6931 at 8.961 kb on - strand, within GFF6931 at 8.961 kb on - strand, within GFF6931 at 9.146 kb on + strand, within GFF6931 at 9.147 kb on - strand, within GFF6931
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 6,930 + GFF6927 0.60 +0.4 6,930 + GFF6927 0.60 +1.0 6,931 - GFF6927 0.61 -1.1 6,931 - GFF6927 0.61 +0.9 6,931 - GFF6927 0.61 -0.1 6,984 - GFF6927 0.77 -0.3 6,984 - GFF6927 0.77 +0.3 7,028 + -0.9 7,029 - -0.2 7,037 + +0.6 7,037 + -2.5 7,037 + +1.7 7,037 + -2.3 7,037 + -1.2 7,261 + GFF6928 0.47 -2.6 7,262 - GFF6928 0.47 -0.2 7,262 - GFF6928 0.47 -2.0 7,262 - GFF6928 0.47 -4.6 7,262 - GFF6928 0.47 -0.9 8,134 - GFF6930 0.45 +2.9 8,239 - GFF6930 0.68 -0.9 8,821 + -0.5 8,960 + GFF6931 0.32 -2.0 8,960 + GFF6931 0.32 +0.2 8,961 - GFF6931 0.32 +1.0 8,961 - GFF6931 0.32 -1.5 9,146 + GFF6931 0.72 -2.5 9,147 - GFF6931 0.73 -0.1
Or see this region's nucleotide sequence