Strain Fitness in Variovorax sp. SCN45 around GFF6870

Experiment: Community=arabino-guar; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=arabino-guar; Passage=4
965	-		GFF6868	0.28	+0.8
975	+		GFF6868	0.30	-1.8
976	-		GFF6868	0.30	-0.9
976	-		GFF6868	0.30	+0.3
976	-		GFF6868	0.30	-1.1
976	-		GFF6868	0.30	-1.2
1,194	+		GFF6868	0.59	-1.2
1,195	-		GFF6868	0.59	+0.9
1,195	-		GFF6868	0.59	-2.2
1,317	+		GFF6868	0.75	-0.7
1,318	-		GFF6868	0.75	-1.5
1,318	-		GFF6868	0.75	+0.9
1,318	-		GFF6868	0.75	-0.1
1,318	-		GFF6868	0.75	-0.4
1,318	-		GFF6868	0.75	+0.5
1,413	+		GFF6868	0.88	+0.3
1,413	+		GFF6868	0.88	-0.1
1,413	+		GFF6868	0.88	+0.9
1,413	+		GFF6868	0.88	+0.9
1,413	+		GFF6868	0.88	-0.9
1,413	-		GFF6868	0.88	-1.1
1,414	-		GFF6868	0.88	-2.0
1,414	-		GFF6868	0.88	+1.9
1,414	-		GFF6868	0.88	-0.4
1,414	-		GFF6868	0.88	-0.4
1,414	-		GFF6868	0.88	-0.4
1,443	+				+1.9
1,443	+				+0.9
1,443	+				-1.3
1,443	+				-0.7
1,443	+				+1.9
1,449	+				+1.9
1,449	+				-1.2
1,450	-				-1.2
1,485	+				+1.9
1,485	+				+0.3
1,485	+				+0.9
1,486	-				+0.3
1,539	+				-2.4
1,539	+				-1.4
1,539	+				-0.2
1,539	+				-0.0
1,539	+				-0.7
1,539	+				-2.5
1,539	+				-3.5
1,539	+				+1.3
1,539	+				-1.9
1,539	+				+0.6
1,539	+				-1.4
1,540	-				+1.5
1,540	-				+0.6
1,540	-				+0.9
1,540	-				-0.1
1,540	-				-0.4
1,540	-				+1.1
1,540	-				-2.7
1,540	-				-1.2
1,540	-				-0.2
1,540	-				-1.2
1,540	-				-0.7
1,585	+		GFF6869	0.19	-1.5
1,607	+		GFF6869	0.24	-0.1
1,608	-		GFF6869	0.24	-2.5
1,608	-		GFF6869	0.24	-0.6
1,608	-		GFF6869	0.24	-1.1
1,608	-		GFF6869	0.24	-0.9
1,608	-		GFF6869	0.24	-0.7
1,610	+		GFF6869	0.25	-0.9
1,610	+		GFF6869	0.25	+0.6
1,610	+		GFF6869	0.25	+4.0
1,610	+		GFF6869	0.25	-0.6
1,610	+		GFF6869	0.25	-0.1
1,707	+		GFF6869	0.45	-1.5
1,708	-		GFF6869	0.45	-0.8
1,717	-		GFF6869	0.47	-0.6
1,840	+		GFF6869	0.73	+2.3
1,840	+		GFF6869	0.73	-1.1
1,840	+		GFF6869	0.73	-2.1
1,841	-		GFF6869	0.74	-1.1
1,841	-		GFF6869	0.74	-2.3
1,841	-		GFF6869	0.74	-0.7
1,841	-		GFF6869	0.74	-2.5
1,841	-		GFF6869	0.74	-2.8
2,013	+				-1.2
2,013	+				-0.5
2,013	+				-2.2
2,013	+				-2.4
2,013	+				-1.1
2,013	+				+1.8
2,013	+				-2.2
2,014	-				-0.4
2,014	-				-0.1
2,014	-				-0.2
2,014	-				+0.5
2,022	+				-1.7
2,022	+				+1.1
2,022	+				+1.9
2,022	+				-0.3
2,023	-				-3.5
2,023	-				+0.9
2,023	-				-1.2
2,023	-				+0.3
2,023	-				-3.3
2,023	-				-0.4
2,056	-				-0.8
2,145	+		GFF6870	0.19	-0.3
2,145	+		GFF6870	0.19	-1.1
2,145	+		GFF6870	0.19	+0.5
2,146	-		GFF6870	0.19	-3.2
2,146	-		GFF6870	0.19	-1.1
2,146	-		GFF6870	0.19	+0.3
2,163	+		GFF6870	0.21	+0.3
2,163	+		GFF6870	0.21	-1.8
2,163	+		GFF6870	0.21	-3.3
2,163	+		GFF6870	0.21	-2.3
2,164	-		GFF6870	0.21	-1.4
2,164	-		GFF6870	0.21	-1.1
2,164	-		GFF6870	0.21	-0.1
2,234	+		GFF6870	0.28	-0.4
2,234	+		GFF6870	0.28	-2.5
2,234	+		GFF6870	0.28	-3.3
2,235	-		GFF6870	0.28	-4.0
2,235	-		GFF6870	0.28	-0.7
2,235	-		GFF6870	0.28	+0.3
2,235	-		GFF6870	0.28	-1.0
2,355	+		GFF6870	0.41	+1.7
2,355	+		GFF6870	0.41	-0.4
2,355	+		GFF6870	0.41	-2.8
2,355	+		GFF6870	0.41	-0.7
2,356	-		GFF6870	0.41	-2.9
2,356	-		GFF6870	0.41	+1.9
2,356	-		GFF6870	0.41	-1.2
2,356	-		GFF6870	0.41	-0.3
2,356	-		GFF6870	0.41	-0.9
2,356	-		GFF6870	0.41	-2.7
2,385	+		GFF6870	0.44	-2.8
2,386	-		GFF6870	0.44	-0.9
2,386	-		GFF6870	0.44	+0.3
2,386	-		GFF6870	0.44	-1.4
2,386	-		GFF6870	0.44	-1.1
2,386	-		GFF6870	0.44	+2.2
2,386	-		GFF6870	0.44	-1.4
2,412	+		GFF6870	0.47	-0.9
2,412	+		GFF6870	0.47	-2.9
2,412	+		GFF6870	0.47	+0.6
2,412	+		GFF6870	0.47	-1.8
2,412	+		GFF6870	0.47	-0.7
2,412	+		GFF6870	0.47	+0.9
2,413	-		GFF6870	0.47	-0.7
2,413	-		GFF6870	0.47	-2.6
2,413	-		GFF6870	0.47	+0.8
2,413	-		GFF6870	0.47	-2.2
2,413	-		GFF6870	0.47	+0.7
2,413	-		GFF6870	0.47	-1.1
2,413	-		GFF6870	0.47	-1.5
2,413	-		GFF6870	0.47	-2.7
2,413	-		GFF6870	0.47	-2.0
2,612	-		GFF6870	0.68	-1.2
2,612	-		GFF6870	0.68	-1.1
2,645	+		GFF6870	0.71	+1.1
2,645	+		GFF6870	0.71	+0.3
2,645	+		GFF6870	0.71	-2.6
2,645	+		GFF6870	0.71	-2.4
2,646	-		GFF6870	0.71	+0.6
2,799	+		GFF6870	0.87	-1.1
2,799	+		GFF6870	0.87	+0.2
2,799	+		GFF6870	0.87	+1.6
2,799	+		GFF6870	0.87	+0.9
2,799	+		GFF6870	0.87	+0.7
2,799	+		GFF6870	0.87	-1.6
2,799	+		GFF6870	0.87	-0.9
2,799	+		GFF6870	0.87	-1.7
2,799	+		GFF6870	0.87	-0.7
2,800	-		GFF6870	0.87	-0.6
2,800	-		GFF6870	0.87	+0.1
2,800	-		GFF6870	0.87	-2.9
2,800	-		GFF6870	0.87	-0.9
2,928	+				-0.1
2,928	+				-0.2
2,928	+				-3.6
2,928	+				+1.1
2,928	+				+2.3
2,929	-				-1.7
2,929	-				+0.5
2,991	+				-0.0
2,991	+				+0.1
2,991	+				+0.2
2,991	+				-0.6
2,992	-				-0.9
2,992	-				-0.5
2,992	-				-0.1
2,992	-				+0.6
2,992	-				-0.5
2,992	-				-1.9
3,000	+				-0.2
3,000	+				+0.8
3,000	+				-1.2
3,000	+				-2.5
3,000	+				-0.9
3,000	+				-0.8
3,000	+				-0.9
3,000	+				+0.3
3,000	+				+0.3
3,000	+				-0.7
3,000	+				-3.6
3,000	+				-1.1
3,000	+				-1.2
3,000	+				-0.5
3,000	+				-0.4
3,000	+				-2.5
3,000	+				+3.9
3,000	+				-0.2
3,000	+				-1.4
3,000	+				-1.2
3,000	+				-0.4
3,000	+				-0.5
3,001	-				-0.2
3,001	-				-1.0
3,001	-				+0.6
3,001	-				-1.9
3,001	-				+0.5
3,001	-				-1.7
3,001	-				+0.9
3,001	-				-0.7
3,001	-				-1.0
3,001	-				-0.9
3,001	-				-0.1
3,001	-				-3.9
3,001	-				-0.6
3,001	-				-1.3
3,001	-				+0.0
3,033	+		GFF6871	0.11	-0.7
3,034	-		GFF6871	0.11	-2.2
3,123	+		GFF6871	0.20	-1.8
3,123	+		GFF6871	0.20	+1.0
3,123	+		GFF6871	0.20	-0.1
3,124	-		GFF6871	0.20	-2.0
3,124	-		GFF6871	0.20	+0.4
3,124	-		GFF6871	0.20	-0.1
3,130	-		GFF6871	0.21	+1.3
3,172	+		GFF6871	0.25	-0.8
3,172	+		GFF6871	0.25	-0.7
3,173	-		GFF6871	0.26	+0.1
3,174	+		GFF6871	0.26	+0.1
3,174	+		GFF6871	0.26	-2.6
3,175	-		GFF6871	0.26	-0.7
3,175	-		GFF6871	0.26	-1.9
3,175	-		GFF6871	0.26	+0.1
3,175	-		GFF6871	0.26	-0.9
3,180	+		GFF6871	0.26	-2.8
3,198	+		GFF6871	0.28	-1.1
3,198	+		GFF6871	0.28	-0.6
3,198	+		GFF6871	0.28	-2.5
3,198	+		GFF6871	0.28	-0.4
3,198	+		GFF6871	0.28	-0.9
3,198	+		GFF6871	0.28	-1.1
3,199	-		GFF6871	0.28	-2.7
3,199	-		GFF6871	0.28	-1.1
3,327	+		GFF6871	0.42	-3.2
3,328	-		GFF6871	0.42	-2.2
3,328	-		GFF6871	0.42	-0.2
3,328	-		GFF6871	0.42	-2.0
3,328	-		GFF6871	0.42	+0.6
3,328	-		GFF6871	0.42	+2.5
3,328	-		GFF6871	0.42	-3.4
3,378	+		GFF6871	0.47	-0.3
3,378	+		GFF6871	0.47	-1.7
3,378	+		GFF6871	0.47	-0.8
3,378	+		GFF6871	0.47	-2.3
3,378	+		GFF6871	0.47	-3.2
3,379	-		GFF6871	0.47	-0.7
3,379	-		GFF6871	0.47	+0.1
3,379	-		GFF6871	0.47	-1.8
3,379	-		GFF6871	0.47	+0.4
3,379	-		GFF6871	0.47	-0.2
3,379	-		GFF6871	0.47	+0.2
3,379	-		GFF6871	0.47	-1.7
3,379	-		GFF6871	0.47	-0.3
3,387	+		GFF6871	0.48	+0.6
3,387	+		GFF6871	0.48	-0.2
3,387	+		GFF6871	0.48	-4.7
3,388	-		GFF6871	0.48	-1.5
3,388	-		GFF6871	0.48	+0.0
3,388	-		GFF6871	0.48	-0.9
3,388	-		GFF6871	0.48	-3.7
3,450	+		GFF6871	0.54	+1.9
3,451	-		GFF6871	0.54	+0.1
3,564	+		GFF6871	0.66	-4.1
3,564	+		GFF6871	0.66	-1.8
3,564	+		GFF6871	0.66	+0.1
3,564	+		GFF6871	0.66	-0.1
3,564	+		GFF6871	0.66	-2.1
3,564	+		GFF6871	0.66	+0.2
3,564	+		GFF6871	0.66	-0.7
3,564	+		GFF6871	0.66	+2.6
3,564	+		GFF6871	0.66	+1.8
3,565	-		GFF6871	0.66	-0.9
3,565	-		GFF6871	0.66	-1.1
3,565	-		GFF6871	0.66	-1.1
3,565	-		GFF6871	0.66	+0.8
3,567	+		GFF6871	0.66	+0.8
3,567	+		GFF6871	0.66	-1.1
3,568	-		GFF6871	0.67	+1.1
3,568	-		GFF6871	0.67	-0.7
3,568	-		GFF6871	0.67	-2.1
3,568	-		GFF6871	0.67	-2.3
3,609	+		GFF6871	0.71	+0.1
3,610	-		GFF6871	0.71	-0.8
3,610	-		GFF6871	0.71	-1.5
3,610	-		GFF6871	0.71	-0.4
3,610	-		GFF6871	0.71	+2.6
3,610	-		GFF6871	0.71	-0.7
3,613	+		GFF6871	0.71	-3.2
3,670	+		GFF6871	0.77	+0.1
3,670	+		GFF6871	0.77	-0.8
3,671	-		GFF6871	0.77	+0.4
3,671	-		GFF6871	0.77	+1.2
3,671	-		GFF6871	0.77	+0.4
3,671	-		GFF6871	0.77	+0.0
3,720	+		GFF6871	0.82	-1.1
3,720	+		GFF6871	0.82	-0.1
3,721	-		GFF6871	0.82	-3.0
3,729	+		GFF6871	0.83	-0.9
3,729	+		GFF6871	0.83	-3.1
3,729	+		GFF6871	0.83	-1.0
3,729	+		GFF6871	0.83	-4.4
3,729	+		GFF6871	0.83	+0.3
3,729	+		GFF6871	0.83	-1.7
3,729	+		GFF6871	0.83	-2.6
3,729	+		GFF6871	0.83	+0.9
3,729	+		GFF6871	0.83	-0.9
3,730	-		GFF6871	0.83	+0.9
3,730	-		GFF6871	0.83	+0.1
3,730	-		GFF6871	0.83	+0.6
3,730	-		GFF6871	0.83	-1.0
3,730	-		GFF6871	0.83	+0.7
3,730	-		GFF6871	0.83	+0.3
3,768	+		GFF6871	0.87	-1.1
3,769	-		GFF6871	0.87	-0.4