Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF684 and GFF685 overlap by 14 nucleotides GFF685 and GFF686 are separated by 14 nucleotides GFF686 and GFF687 are separated by 122 nucleotides
GFF684 - FIG00553873: hypothetical protein, at 738,094 to 739,074
GFF684
GFF685 - Tricarboxylate transport protein TctC, at 739,061 to 740,023
GFF685
GFF686 - porin, Gram-negative type, at 740,038 to 741,165
GFF686
GFF687 - Dihydroxy-acid dehydratase (EC 4.2.1.9), at 741,288 to 742,988
GFF687
Position (kb) 740
741
742 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 739.062 kb on + strand at 739.063 kb on - strand at 739.068 kb on - strand at 739.110 kb on + strand at 739.110 kb on + strand at 739.111 kb on - strand at 739.156 kb on - strand at 739.482 kb on + strand, within GFF685 at 739.482 kb on + strand, within GFF685 at 739.482 kb on + strand, within GFF685 at 739.483 kb on - strand, within GFF685 at 739.483 kb on - strand, within GFF685 at 739.762 kb on - strand, within GFF685 at 740.117 kb on + strand at 740.118 kb on - strand at 740.118 kb on - strand at 740.118 kb on - strand at 740.150 kb on + strand at 740.150 kb on + strand at 740.150 kb on + strand at 740.150 kb on + strand at 740.150 kb on + strand at 740.150 kb on + strand at 740.150 kb on + strand at 740.151 kb on - strand, within GFF686 at 740.151 kb on - strand, within GFF686 at 740.151 kb on - strand, within GFF686 at 740.151 kb on - strand, within GFF686 at 740.151 kb on - strand, within GFF686 at 740.151 kb on - strand, within GFF686 at 740.151 kb on - strand, within GFF686 at 740.151 kb on - strand, within GFF686 at 740.151 kb on - strand, within GFF686 at 740.151 kb on - strand, within GFF686 at 740.160 kb on - strand, within GFF686 at 740.160 kb on - strand, within GFF686 at 740.192 kb on + strand, within GFF686 at 740.279 kb on + strand, within GFF686 at 740.279 kb on - strand, within GFF686 at 740.280 kb on - strand, within GFF686 at 740.280 kb on - strand, within GFF686 at 740.280 kb on - strand, within GFF686 at 740.285 kb on + strand, within GFF686 at 740.285 kb on + strand, within GFF686 at 740.285 kb on + strand, within GFF686 at 740.285 kb on + strand, within GFF686 at 740.286 kb on - strand, within GFF686 at 740.286 kb on - strand, within GFF686 at 740.286 kb on - strand, within GFF686 at 740.371 kb on - strand, within GFF686 at 740.371 kb on - strand, within GFF686 at 740.390 kb on + strand, within GFF686 at 740.390 kb on + strand, within GFF686 at 740.391 kb on - strand, within GFF686 at 740.391 kb on - strand, within GFF686 at 740.450 kb on + strand, within GFF686 at 740.450 kb on + strand, within GFF686 at 740.450 kb on + strand, within GFF686 at 740.451 kb on - strand, within GFF686 at 740.477 kb on - strand, within GFF686 at 740.612 kb on + strand, within GFF686 at 740.642 kb on + strand, within GFF686 at 740.643 kb on - strand, within GFF686 at 740.643 kb on - strand, within GFF686 at 740.643 kb on - strand, within GFF686 at 740.643 kb on - strand, within GFF686 at 740.753 kb on + strand, within GFF686 at 740.753 kb on + strand, within GFF686 at 740.753 kb on + strand, within GFF686 at 740.753 kb on + strand, within GFF686 at 740.754 kb on - strand, within GFF686 at 740.754 kb on - strand, within GFF686 at 740.754 kb on - strand, within GFF686 at 740.754 kb on - strand, within GFF686 at 740.765 kb on + strand, within GFF686 at 740.765 kb on + strand, within GFF686 at 740.766 kb on - strand, within GFF686 at 740.766 kb on - strand, within GFF686 at 740.766 kb on - strand, within GFF686 at 741.060 kb on - strand at 741.060 kb on - strand at 741.060 kb on - strand at 741.160 kb on - strand at 741.361 kb on + strand at 741.362 kb on - strand at 742.114 kb on + strand, within GFF687 at 742.115 kb on - strand, within GFF687
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 739,062 + +0.4 739,063 - +0.1 739,068 - -3.0 739,110 + -1.0 739,110 + -1.0 739,111 - -0.3 739,156 - -0.6 739,482 + GFF685 0.44 -1.5 739,482 + GFF685 0.44 +2.3 739,482 + GFF685 0.44 -2.0 739,483 - GFF685 0.44 +0.9 739,483 - GFF685 0.44 +0.3 739,762 - GFF685 0.73 -0.5 740,117 + -0.1 740,118 - -3.4 740,118 - +1.0 740,118 - +4.9 740,150 + -0.7 740,150 + +1.3 740,150 + -1.2 740,150 + -0.5 740,150 + -1.2 740,150 + +1.8 740,150 + +0.8 740,151 - GFF686 0.10 -1.3 740,151 - GFF686 0.10 -1.8 740,151 - GFF686 0.10 -1.7 740,151 - GFF686 0.10 -1.5 740,151 - GFF686 0.10 -2.2 740,151 - GFF686 0.10 -0.5 740,151 - GFF686 0.10 +0.5 740,151 - GFF686 0.10 -0.3 740,151 - GFF686 0.10 +0.0 740,151 - GFF686 0.10 +1.3 740,160 - GFF686 0.11 -0.3 740,160 - GFF686 0.11 +0.8 740,192 + GFF686 0.14 -0.9 740,279 + GFF686 0.21 +1.6 740,279 - GFF686 0.21 +0.3 740,280 - GFF686 0.21 -1.2 740,280 - GFF686 0.21 -3.1 740,280 - GFF686 0.21 -3.3 740,285 + GFF686 0.22 -0.5 740,285 + GFF686 0.22 -1.5 740,285 + GFF686 0.22 -1.5 740,285 + GFF686 0.22 -0.7 740,286 - GFF686 0.22 -0.3 740,286 - GFF686 0.22 -1.0 740,286 - GFF686 0.22 -4.2 740,371 - GFF686 0.30 +0.2 740,371 - GFF686 0.30 -2.2 740,390 + GFF686 0.31 -0.0 740,390 + GFF686 0.31 -3.2 740,391 - GFF686 0.31 +0.3 740,391 - GFF686 0.31 -3.0 740,450 + GFF686 0.37 -1.0 740,450 + GFF686 0.37 -0.4 740,450 + GFF686 0.37 -1.9 740,451 - GFF686 0.37 -0.1 740,477 - GFF686 0.39 -1.3 740,612 + GFF686 0.51 -0.0 740,642 + GFF686 0.54 +0.2 740,643 - GFF686 0.54 -1.3 740,643 - GFF686 0.54 -0.8 740,643 - GFF686 0.54 -1.7 740,643 - GFF686 0.54 -0.2 740,753 + GFF686 0.63 +0.4 740,753 + GFF686 0.63 +2.1 740,753 + GFF686 0.63 +0.7 740,753 + GFF686 0.63 -0.3 740,754 - GFF686 0.63 -1.4 740,754 - GFF686 0.63 -1.2 740,754 - GFF686 0.63 -0.0 740,754 - GFF686 0.63 +0.1 740,765 + GFF686 0.64 -0.1 740,765 + GFF686 0.64 -0.4 740,766 - GFF686 0.65 +0.8 740,766 - GFF686 0.65 +0.6 740,766 - GFF686 0.65 -0.7 741,060 - -0.3 741,060 - -0.5 741,060 - -0.4 741,160 - +0.7 741,361 + -0.3 741,362 - -1.7 742,114 + GFF687 0.49 +0.1 742,115 - GFF687 0.49 -0.6
Or see this region's nucleotide sequence