Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6772 and GFF6773 are separated by 150 nucleotides GFF6773 and GFF6774 are separated by 107 nucleotides
GFF6772 - L-arabonate dehydratase (EC 4.2.1.25), at 17,751 to 19,487
GFF6772
GFF6773 - Transcriptional regulator, GntR family, at 19,638 to 20,381
GFF6773
GFF6774 - ABC transporter, substrate-binding protein (cluster 1, maltose/g3p/polyamine/iron), at 20,489 to 21,871
GFF6774
Position (kb) 19
20
21 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 19.184 kb on - strand, within GFF6772 at 19.261 kb on + strand, within GFF6772 at 19.405 kb on + strand at 19.405 kb on + strand at 19.406 kb on - strand at 19.406 kb on - strand at 19.406 kb on - strand at 19.502 kb on + strand at 19.502 kb on + strand at 19.503 kb on - strand at 19.503 kb on - strand at 19.503 kb on - strand at 19.566 kb on + strand at 19.566 kb on + strand at 19.566 kb on + strand at 19.566 kb on + strand at 19.567 kb on - strand at 19.701 kb on + strand at 19.702 kb on - strand at 20.022 kb on + strand, within GFF6773 at 20.061 kb on + strand, within GFF6773 at 20.061 kb on + strand, within GFF6773 at 20.269 kb on + strand, within GFF6773 at 20.269 kb on + strand, within GFF6773 at 20.270 kb on - strand, within GFF6773 at 20.270 kb on - strand, within GFF6773 at 20.270 kb on - strand, within GFF6773 at 20.270 kb on - strand, within GFF6773 at 20.380 kb on - strand at 20.380 kb on - strand at 20.600 kb on + strand at 20.600 kb on + strand at 20.600 kb on + strand at 20.600 kb on + strand at 20.601 kb on - strand at 20.601 kb on - strand at 20.601 kb on - strand at 20.601 kb on - strand at 20.765 kb on + strand, within GFF6774 at 20.766 kb on - strand, within GFF6774 at 20.766 kb on - strand, within GFF6774 at 20.795 kb on + strand, within GFF6774 at 20.796 kb on - strand, within GFF6774 at 20.796 kb on - strand, within GFF6774 at 20.796 kb on - strand, within GFF6774 at 20.796 kb on - strand, within GFF6774 at 20.876 kb on + strand, within GFF6774 at 20.876 kb on + strand, within GFF6774 at 20.876 kb on + strand, within GFF6774 at 20.876 kb on + strand, within GFF6774 at 20.876 kb on + strand, within GFF6774 at 20.876 kb on + strand, within GFF6774 at 20.877 kb on - strand, within GFF6774 at 20.877 kb on - strand, within GFF6774 at 20.877 kb on - strand, within GFF6774 at 20.877 kb on - strand, within GFF6774 at 20.883 kb on - strand, within GFF6774 at 20.909 kb on + strand, within GFF6774 at 20.910 kb on - strand, within GFF6774 at 20.910 kb on - strand, within GFF6774 at 20.913 kb on - strand, within GFF6774 at 20.913 kb on - strand, within GFF6774 at 20.952 kb on - strand, within GFF6774 at 21.017 kb on + strand, within GFF6774 at 21.018 kb on - strand, within GFF6774 at 21.018 kb on - strand, within GFF6774 at 21.152 kb on + strand, within GFF6774 at 21.152 kb on + strand, within GFF6774 at 21.152 kb on + strand, within GFF6774 at 21.153 kb on - strand, within GFF6774 at 21.153 kb on - strand, within GFF6774 at 21.153 kb on - strand, within GFF6774 at 21.239 kb on + strand, within GFF6774 at 21.251 kb on + strand, within GFF6774 at 21.252 kb on - strand, within GFF6774
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 19,184 - GFF6772 0.82 -2.1 19,261 + GFF6772 0.87 +0.2 19,405 + -1.3 19,405 + -2.3 19,406 - -1.5 19,406 - +0.5 19,406 - +0.2 19,502 + -2.7 19,502 + -0.3 19,503 - +0.5 19,503 - -3.4 19,503 - -1.8 19,566 + +0.9 19,566 + -0.9 19,566 + -0.3 19,566 + +1.1 19,567 - +0.6 19,701 + +1.6 19,702 - +1.0 20,022 + GFF6773 0.52 -1.6 20,061 + GFF6773 0.57 +3.8 20,061 + GFF6773 0.57 -0.8 20,269 + GFF6773 0.85 -2.6 20,269 + GFF6773 0.85 -2.2 20,270 - GFF6773 0.85 -2.9 20,270 - GFF6773 0.85 -1.1 20,270 - GFF6773 0.85 +0.6 20,270 - GFF6773 0.85 +0.1 20,380 - -1.1 20,380 - +0.3 20,600 + -0.8 20,600 + -3.4 20,600 + -1.2 20,600 + -0.6 20,601 - +1.5 20,601 - -0.8 20,601 - -0.1 20,601 - -0.4 20,765 + GFF6774 0.20 +1.0 20,766 - GFF6774 0.20 -1.1 20,766 - GFF6774 0.20 +1.5 20,795 + GFF6774 0.22 -0.8 20,796 - GFF6774 0.22 -0.8 20,796 - GFF6774 0.22 -1.0 20,796 - GFF6774 0.22 -1.3 20,796 - GFF6774 0.22 -2.1 20,876 + GFF6774 0.28 -0.1 20,876 + GFF6774 0.28 -2.5 20,876 + GFF6774 0.28 -1.0 20,876 + GFF6774 0.28 +1.7 20,876 + GFF6774 0.28 +0.3 20,876 + GFF6774 0.28 +1.2 20,877 - GFF6774 0.28 +1.0 20,877 - GFF6774 0.28 -2.7 20,877 - GFF6774 0.28 +0.3 20,877 - GFF6774 0.28 -1.1 20,883 - GFF6774 0.28 +0.8 20,909 + GFF6774 0.30 -1.9 20,910 - GFF6774 0.30 -2.8 20,910 - GFF6774 0.30 +1.9 20,913 - GFF6774 0.31 +0.2 20,913 - GFF6774 0.31 +0.8 20,952 - GFF6774 0.33 -0.6 21,017 + GFF6774 0.38 +0.4 21,018 - GFF6774 0.38 -1.5 21,018 - GFF6774 0.38 -2.1 21,152 + GFF6774 0.48 +1.0 21,152 + GFF6774 0.48 +0.5 21,152 + GFF6774 0.48 -1.5 21,153 - GFF6774 0.48 +0.5 21,153 - GFF6774 0.48 -1.8 21,153 - GFF6774 0.48 -0.5 21,239 + GFF6774 0.54 +2.5 21,251 + GFF6774 0.55 -0.6 21,252 - GFF6774 0.55 -0.5
Or see this region's nucleotide sequence