Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6758 and GFF6759 are separated by 61 nucleotides GFF6759 and GFF6760 are separated by 101 nucleotides GFF6760 and GFF6761 overlap by 4 nucleotides
GFF6758 - Lactoylglutathione lyase (EC 4.4.1.5), at 5,227 to 5,676
GFF6758
GFF6759 - Glutathione S-transferase, at 5,738 to 6,418
GFF6759
GFF6760 - Ferric iron ABC transporter, ATP-binding protein, at 6,520 to 7,206
GFF6760
GFF6761 - Ferric iron ABC transporter, permease protein, at 7,203 to 8,879
GFF6761
Position (kb) 5
6
7 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 4.864 kb on + strand at 4.935 kb on - strand at 4.935 kb on - strand at 5.106 kb on + strand at 5.106 kb on + strand at 5.140 kb on + strand at 5.168 kb on + strand at 5.168 kb on + strand at 5.168 kb on + strand at 5.168 kb on + strand at 5.169 kb on - strand at 5.169 kb on - strand at 5.169 kb on - strand at 5.169 kb on - strand at 5.169 kb on - strand at 5.221 kb on + strand at 5.221 kb on + strand at 5.221 kb on + strand at 5.221 kb on + strand at 5.222 kb on - strand at 5.222 kb on - strand at 5.282 kb on + strand, within GFF6758 at 5.282 kb on + strand, within GFF6758 at 5.282 kb on + strand, within GFF6758 at 5.283 kb on - strand, within GFF6758 at 5.302 kb on + strand, within GFF6758 at 5.302 kb on + strand, within GFF6758 at 5.302 kb on + strand, within GFF6758 at 5.303 kb on - strand, within GFF6758 at 5.305 kb on + strand, within GFF6758 at 5.306 kb on - strand, within GFF6758 at 5.318 kb on + strand, within GFF6758 at 5.426 kb on + strand, within GFF6758 at 5.426 kb on + strand, within GFF6758 at 5.426 kb on + strand, within GFF6758 at 5.477 kb on + strand, within GFF6758 at 5.477 kb on + strand, within GFF6758 at 5.477 kb on + strand, within GFF6758 at 5.477 kb on + strand, within GFF6758 at 5.478 kb on - strand, within GFF6758 at 5.478 kb on - strand, within GFF6758 at 5.478 kb on - strand, within GFF6758 at 5.478 kb on - strand, within GFF6758 at 5.478 kb on - strand, within GFF6758 at 5.478 kb on - strand, within GFF6758 at 5.478 kb on - strand, within GFF6758 at 5.478 kb on - strand, within GFF6758 at 5.498 kb on + strand, within GFF6758 at 5.498 kb on + strand, within GFF6758 at 5.498 kb on + strand, within GFF6758 at 5.498 kb on + strand, within GFF6758 at 5.498 kb on + strand, within GFF6758 at 5.498 kb on + strand, within GFF6758 at 5.498 kb on + strand, within GFF6758 at 5.498 kb on + strand, within GFF6758 at 5.499 kb on - strand, within GFF6758 at 5.499 kb on - strand, within GFF6758 at 5.561 kb on + strand, within GFF6758 at 5.561 kb on + strand, within GFF6758 at 5.561 kb on + strand, within GFF6758 at 5.561 kb on + strand, within GFF6758 at 5.561 kb on + strand, within GFF6758 at 5.561 kb on + strand, within GFF6758 at 5.561 kb on + strand, within GFF6758 at 5.561 kb on + strand, within GFF6758 at 5.561 kb on + strand, within GFF6758 at 5.561 kb on + strand, within GFF6758 at 5.562 kb on - strand, within GFF6758 at 5.562 kb on - strand, within GFF6758 at 5.562 kb on - strand, within GFF6758 at 5.562 kb on - strand, within GFF6758 at 5.562 kb on - strand, within GFF6758 at 5.562 kb on - strand, within GFF6758 at 5.562 kb on - strand, within GFF6758 at 5.562 kb on - strand, within GFF6758 at 5.567 kb on + strand, within GFF6758 at 5.567 kb on + strand, within GFF6758 at 5.567 kb on + strand, within GFF6758 at 5.567 kb on + strand, within GFF6758 at 5.567 kb on + strand, within GFF6758 at 5.567 kb on + strand, within GFF6758 at 5.567 kb on + strand, within GFF6758 at 5.567 kb on + strand, within GFF6758 at 5.567 kb on + strand, within GFF6758 at 5.567 kb on + strand, within GFF6758 at 5.568 kb on - strand, within GFF6758 at 5.568 kb on - strand, within GFF6758 at 5.568 kb on - strand, within GFF6758 at 5.568 kb on - strand, within GFF6758 at 5.618 kb on + strand, within GFF6758 at 5.618 kb on + strand, within GFF6758 at 5.618 kb on + strand, within GFF6758 at 5.618 kb on + strand, within GFF6758 at 5.618 kb on + strand, within GFF6758 at 5.619 kb on - strand, within GFF6758 at 5.691 kb on + strand at 5.691 kb on + strand at 5.691 kb on + strand at 5.691 kb on + strand at 5.691 kb on + strand at 5.691 kb on + strand at 5.691 kb on + strand at 5.691 kb on + strand at 5.691 kb on + strand at 5.691 kb on + strand at 5.691 kb on + strand at 5.691 kb on + strand at 5.691 kb on + strand at 5.691 kb on + strand at 5.691 kb on + strand at 5.692 kb on - strand at 5.692 kb on - strand at 5.692 kb on - strand at 5.692 kb on - strand at 5.692 kb on - strand at 5.695 kb on + strand at 5.695 kb on + strand at 5.695 kb on + strand at 5.695 kb on + strand at 5.695 kb on + strand at 5.695 kb on + strand at 5.696 kb on - strand at 5.696 kb on - strand at 5.696 kb on - strand at 5.696 kb on - strand at 5.696 kb on - strand at 5.696 kb on - strand at 5.696 kb on - strand at 5.979 kb on + strand, within GFF6759 at 5.980 kb on - strand, within GFF6759 at 6.075 kb on + strand, within GFF6759 at 6.076 kb on - strand, within GFF6759 at 6.189 kb on + strand, within GFF6759 at 6.189 kb on + strand, within GFF6759 at 6.189 kb on + strand, within GFF6759 at 6.190 kb on - strand, within GFF6759 at 6.190 kb on - strand, within GFF6759 at 6.375 kb on + strand at 6.375 kb on + strand at 6.375 kb on + strand at 6.375 kb on + strand at 6.375 kb on + strand at 6.376 kb on - strand at 6.502 kb on + strand at 6.502 kb on + strand at 6.502 kb on + strand at 6.503 kb on - strand at 6.521 kb on + strand at 6.521 kb on + strand at 6.521 kb on + strand at 6.521 kb on + strand at 6.521 kb on + strand at 6.522 kb on - strand at 6.522 kb on - strand at 6.522 kb on - strand at 6.522 kb on - strand at 6.522 kb on - strand at 6.522 kb on - strand at 6.522 kb on - strand at 6.929 kb on + strand, within GFF6760 at 6.929 kb on + strand, within GFF6760 at 6.930 kb on - strand, within GFF6760 at 6.930 kb on - strand, within GFF6760 at 6.930 kb on - strand, within GFF6760 at 6.930 kb on - strand, within GFF6760 at 6.930 kb on - strand, within GFF6760 at 6.949 kb on + strand, within GFF6760 at 6.950 kb on - strand, within GFF6760 at 7.321 kb on + strand at 7.321 kb on + strand at 7.321 kb on + strand at 7.321 kb on + strand at 7.321 kb on + strand at 7.321 kb on + strand at 7.321 kb on + strand at 7.321 kb on + strand at 7.322 kb on - strand at 7.322 kb on - strand at 7.322 kb on - strand at 7.345 kb on + strand at 7.402 kb on - strand, within GFF6761
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 4,864 + -0.7 4,935 - +0.7 4,935 - -1.3 5,106 + +0.7 5,106 + -0.5 5,140 + +2.3 5,168 + +0.4 5,168 + -0.5 5,168 + +0.7 5,168 + +0.4 5,169 - -1.2 5,169 - +0.7 5,169 - +1.1 5,169 - -0.5 5,169 - -0.5 5,221 + -0.8 5,221 + -2.4 5,221 + +3.1 5,221 + +0.0 5,222 - +2.8 5,222 - +0.2 5,282 + GFF6758 0.12 +1.2 5,282 + GFF6758 0.12 -1.3 5,282 + GFF6758 0.12 +0.5 5,283 - GFF6758 0.12 +1.7 5,302 + GFF6758 0.17 +0.1 5,302 + GFF6758 0.17 -2.1 5,302 + GFF6758 0.17 +1.3 5,303 - GFF6758 0.17 +0.7 5,305 + GFF6758 0.17 -0.8 5,306 - GFF6758 0.18 +2.1 5,318 + GFF6758 0.20 -1.8 5,426 + GFF6758 0.44 -0.7 5,426 + GFF6758 0.44 -1.3 5,426 + GFF6758 0.44 -0.2 5,477 + GFF6758 0.56 +0.2 5,477 + GFF6758 0.56 +0.2 5,477 + GFF6758 0.56 -0.8 5,477 + GFF6758 0.56 -3.0 5,478 - GFF6758 0.56 -2.2 5,478 - GFF6758 0.56 +0.9 5,478 - GFF6758 0.56 +0.6 5,478 - GFF6758 0.56 -0.5 5,478 - GFF6758 0.56 -2.1 5,478 - GFF6758 0.56 +2.1 5,478 - GFF6758 0.56 +0.1 5,478 - GFF6758 0.56 +1.9 5,498 + GFF6758 0.60 +0.6 5,498 + GFF6758 0.60 +0.1 5,498 + GFF6758 0.60 +0.2 5,498 + GFF6758 0.60 -2.4 5,498 + GFF6758 0.60 -2.2 5,498 + GFF6758 0.60 -1.1 5,498 + GFF6758 0.60 -3.0 5,498 + GFF6758 0.60 -1.5 5,499 - GFF6758 0.60 -3.9 5,499 - GFF6758 0.60 +0.4 5,561 + GFF6758 0.74 -0.7 5,561 + GFF6758 0.74 -1.6 5,561 + GFF6758 0.74 +1.2 5,561 + GFF6758 0.74 -0.3 5,561 + GFF6758 0.74 -1.9 5,561 + GFF6758 0.74 -0.5 5,561 + GFF6758 0.74 +1.0 5,561 + GFF6758 0.74 -2.5 5,561 + GFF6758 0.74 +0.8 5,561 + GFF6758 0.74 -3.2 5,562 - GFF6758 0.74 -0.5 5,562 - GFF6758 0.74 +0.6 5,562 - GFF6758 0.74 -0.1 5,562 - GFF6758 0.74 +0.1 5,562 - GFF6758 0.74 +1.2 5,562 - GFF6758 0.74 -1.5 5,562 - GFF6758 0.74 -1.8 5,562 - GFF6758 0.74 -1.8 5,567 + GFF6758 0.76 +1.4 5,567 + GFF6758 0.76 -2.5 5,567 + GFF6758 0.76 -0.3 5,567 + GFF6758 0.76 -3.4 5,567 + GFF6758 0.76 +1.2 5,567 + GFF6758 0.76 -2.6 5,567 + GFF6758 0.76 -2.1 5,567 + GFF6758 0.76 +0.6 5,567 + GFF6758 0.76 +0.9 5,567 + GFF6758 0.76 +0.9 5,568 - GFF6758 0.76 -0.6 5,568 - GFF6758 0.76 -1.8 5,568 - GFF6758 0.76 -1.1 5,568 - GFF6758 0.76 -1.4 5,618 + GFF6758 0.87 +0.6 5,618 + GFF6758 0.87 -1.9 5,618 + GFF6758 0.87 -0.6 5,618 + GFF6758 0.87 +1.8 5,618 + GFF6758 0.87 +0.0 5,619 - GFF6758 0.87 -1.9 5,691 + -0.5 5,691 + +2.4 5,691 + +4.1 5,691 + +0.4 5,691 + +0.3 5,691 + -0.8 5,691 + +1.7 5,691 + +0.0 5,691 + +0.1 5,691 + +0.0 5,691 + -0.3 5,691 + -1.8 5,691 + +0.4 5,691 + -0.3 5,691 + -1.6 5,692 - -1.1 5,692 - -0.7 5,692 - +0.3 5,692 - +1.9 5,692 - +0.5 5,695 + -0.2 5,695 + -0.8 5,695 + +0.8 5,695 + -2.7 5,695 + -1.8 5,695 + -0.1 5,696 - +0.7 5,696 - +0.2 5,696 - -2.6 5,696 - +1.5 5,696 - +0.4 5,696 - -1.1 5,696 - +0.5 5,979 + GFF6759 0.35 +0.4 5,980 - GFF6759 0.36 -2.6 6,075 + GFF6759 0.49 +1.9 6,076 - GFF6759 0.50 -3.1 6,189 + GFF6759 0.66 +1.1 6,189 + GFF6759 0.66 +2.0 6,189 + GFF6759 0.66 -0.4 6,190 - GFF6759 0.66 -0.5 6,190 - GFF6759 0.66 +1.5 6,375 + +2.5 6,375 + +2.3 6,375 + +0.2 6,375 + -1.5 6,375 + -2.5 6,376 - +0.5 6,502 + +0.5 6,502 + -0.5 6,502 + -3.1 6,503 - +0.5 6,521 + -0.5 6,521 + +0.1 6,521 + +3.0 6,521 + +0.5 6,521 + +0.1 6,522 - -0.7 6,522 - +0.1 6,522 - +2.9 6,522 - +1.7 6,522 - -0.9 6,522 - -0.7 6,522 - -1.1 6,929 + GFF6760 0.60 -0.3 6,929 + GFF6760 0.60 -0.8 6,930 - GFF6760 0.60 +0.6 6,930 - GFF6760 0.60 +0.0 6,930 - GFF6760 0.60 +1.1 6,930 - GFF6760 0.60 +1.1 6,930 - GFF6760 0.60 +0.1 6,949 + GFF6760 0.62 -2.1 6,950 - GFF6760 0.63 -1.8 7,321 + -0.4 7,321 + +0.0 7,321 + +2.2 7,321 + -2.9 7,321 + -0.0 7,321 + -2.2 7,321 + +0.6 7,321 + -2.4 7,322 - +0.4 7,322 - -1.5 7,322 - -0.1 7,345 + +0.9 7,402 - GFF6761 0.12 -2.3
Or see this region's nucleotide sequence