Strain Fitness in Variovorax sp. SCN45 around GFF6615

Experiment: Community=arabino-guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6614 and GFF6615 are separated by 654 nucleotidesGFF6615 and GFF6616 are separated by 78 nucleotides GFF6614 - hypothetical protein, at 57,074 to 57,715 GFF6614 GFF6615 - putative plasmid stabilization protein, at 58,370 to 60,397 GFF6615 GFF6616 - UPF0380 proteins YafZ and homologs, at 60,476 to 61,300 GFF6616 Position (kb) 58 59 60 61Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 57.379 kb on + strand, within GFF6614at 57.379 kb on + strand, within GFF6614at 57.380 kb on - strand, within GFF6614at 57.381 kb on + strand, within GFF6614at 57.382 kb on - strand, within GFF6614at 57.382 kb on - strand, within GFF6614at 57.382 kb on - strand, within GFF6614at 57.393 kb on + strand, within GFF6614at 57.393 kb on + strand, within GFF6614at 57.393 kb on + strand, within GFF6614at 57.394 kb on - strand, within GFF6614at 57.394 kb on - strand, within GFF6614at 57.394 kb on - strand, within GFF6614at 57.394 kb on - strand, within GFF6614at 57.531 kb on - strand, within GFF6614at 57.621 kb on + strand, within GFF6614at 57.622 kb on - strand, within GFF6614at 57.711 kb on + strandat 57.711 kb on + strandat 57.712 kb on - strandat 57.712 kb on - strandat 57.732 kb on + strandat 57.732 kb on + strandat 57.732 kb on + strandat 57.732 kb on + strandat 57.733 kb on - strandat 57.733 kb on - strandat 57.733 kb on - strandat 57.733 kb on - strandat 57.733 kb on - strandat 57.733 kb on - strandat 57.733 kb on - strandat 57.733 kb on - strandat 57.733 kb on - strandat 57.734 kb on + strandat 57.734 kb on + strandat 57.734 kb on + strandat 57.734 kb on + strandat 57.735 kb on - strandat 57.735 kb on - strandat 57.735 kb on - strandat 57.839 kb on + strandat 57.839 kb on + strandat 57.839 kb on + strandat 57.839 kb on + strandat 57.840 kb on - strandat 57.840 kb on - strandat 57.926 kb on + strandat 57.926 kb on + strandat 57.926 kb on + strandat 57.926 kb on + strandat 57.927 kb on - strandat 57.930 kb on + strandat 57.930 kb on + strandat 57.931 kb on - strandat 58.259 kb on + strandat 58.259 kb on + strandat 58.260 kb on - strandat 58.260 kb on - strandat 58.260 kb on - strandat 58.611 kb on + strand, within GFF6615at 58.611 kb on + strand, within GFF6615at 58.655 kb on + strand, within GFF6615at 58.656 kb on - strand, within GFF6615at 59.085 kb on + strand, within GFF6615at 59.085 kb on + strand, within GFF6615at 59.085 kb on + strand, within GFF6615at 59.085 kb on + strand, within GFF6615at 59.086 kb on - strand, within GFF6615at 59.086 kb on - strand, within GFF6615at 59.086 kb on - strand, within GFF6615at 59.086 kb on - strand, within GFF6615at 59.086 kb on - strand, within GFF6615at 59.086 kb on - strand, within GFF6615at 59.286 kb on + strand, within GFF6615at 59.622 kb on + strand, within GFF6615at 59.622 kb on + strand, within GFF6615at 59.622 kb on + strand, within GFF6615at 59.622 kb on + strand, within GFF6615at 59.623 kb on - strand, within GFF6615at 59.793 kb on + strand, within GFF6615at 59.793 kb on + strand, within GFF6615at 59.794 kb on - strand, within GFF6615at 59.987 kb on + strand, within GFF6615at 59.988 kb on - strand, within GFF6615at 60.178 kb on - strand, within GFF6615at 60.547 kb on + strandat 60.937 kb on + strand, within GFF6616at 60.937 kb on + strand, within GFF6616at 60.938 kb on - strand, within GFF6616at 60.967 kb on - strand, within GFF6616at 61.053 kb on - strand, within GFF6616at 61.164 kb on + strand, within GFF6616at 61.164 kb on + strand, within GFF6616at 61.164 kb on + strand, within GFF6616at 61.164 kb on + strand, within GFF6616at 61.164 kb on + strand, within GFF6616at 61.164 kb on + strand, within GFF6616at 61.164 kb on + strand, within GFF6616at 61.165 kb on - strand, within GFF6616at 61.165 kb on - strand, within GFF6616at 61.165 kb on - strand, within GFF6616at 61.165 kb on - strand, within GFF6616at 61.165 kb on - strand, within GFF6616at 61.165 kb on - strand, within GFF6616at 61.170 kb on + strand, within GFF6616at 61.349 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4
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57,379 + GFF6614 0.48 -0.4
57,379 + GFF6614 0.48 -1.6
57,380 - GFF6614 0.48 +0.6
57,381 + GFF6614 0.48 +0.6
57,382 - GFF6614 0.48 -1.6
57,382 - GFF6614 0.48 -0.0
57,382 - GFF6614 0.48 -3.3
57,393 + GFF6614 0.50 +0.6
57,393 + GFF6614 0.50 +1.0
57,393 + GFF6614 0.50 +1.2
57,394 - GFF6614 0.50 +0.4
57,394 - GFF6614 0.50 -4.3
57,394 - GFF6614 0.50 -0.5
57,394 - GFF6614 0.50 -2.2
57,531 - GFF6614 0.71 -1.9
57,621 + GFF6614 0.85 +2.2
57,622 - GFF6614 0.85 +1.6
57,711 + -0.8
57,711 + -1.6
57,712 - +0.0
57,712 - -0.4
57,732 + -3.1
57,732 + +1.3
57,732 + +0.4
57,732 + +0.1
57,733 - -1.0
57,733 - -1.2
57,733 - +0.3
57,733 - -2.0
57,733 - -0.5
57,733 - +2.2
57,733 - +0.7
57,733 - -2.1
57,733 - +0.0
57,734 + +0.6
57,734 + +2.7
57,734 + -1.9
57,734 + +1.4
57,735 - +0.7
57,735 - -0.2
57,735 - +0.7
57,839 + +1.0
57,839 + -0.7
57,839 + -2.7
57,839 + +0.5
57,840 - -1.8
57,840 - -0.4
57,926 + -0.5
57,926 + -1.2
57,926 + -2.4
57,926 + +1.5
57,927 - +1.2
57,930 + +0.1
57,930 + -2.0
57,931 - -1.6
58,259 + +0.1
58,259 + +0.4
58,260 - +0.7
58,260 - -0.4
58,260 - +0.2
58,611 + GFF6615 0.12 -2.3
58,611 + GFF6615 0.12 -1.5
58,655 + GFF6615 0.14 -0.4
58,656 - GFF6615 0.14 +1.1
59,085 + GFF6615 0.35 +1.7
59,085 + GFF6615 0.35 +1.9
59,085 + GFF6615 0.35 -2.2
59,085 + GFF6615 0.35 +1.0
59,086 - GFF6615 0.35 +1.1
59,086 - GFF6615 0.35 -2.4
59,086 - GFF6615 0.35 -2.7
59,086 - GFF6615 0.35 +0.2
59,086 - GFF6615 0.35 -0.8
59,086 - GFF6615 0.35 -0.4
59,286 + GFF6615 0.45 +3.4
59,622 + GFF6615 0.62 +0.7
59,622 + GFF6615 0.62 -1.4
59,622 + GFF6615 0.62 -1.4
59,622 + GFF6615 0.62 -0.6
59,623 - GFF6615 0.62 -1.2
59,793 + GFF6615 0.70 -0.0
59,793 + GFF6615 0.70 -0.1
59,794 - GFF6615 0.70 +1.5
59,987 + GFF6615 0.80 +1.1
59,988 - GFF6615 0.80 +1.1
60,178 - GFF6615 0.89 +1.3
60,547 + -1.9
60,937 + GFF6616 0.56 -0.9
60,937 + GFF6616 0.56 -2.5
60,938 - GFF6616 0.56 -4.1
60,967 - GFF6616 0.60 -1.4
61,053 - GFF6616 0.70 +2.8
61,164 + GFF6616 0.83 -0.1
61,164 + GFF6616 0.83 -1.6
61,164 + GFF6616 0.83 +1.0
61,164 + GFF6616 0.83 -1.7
61,164 + GFF6616 0.83 +0.9
61,164 + GFF6616 0.83 -3.0
61,164 + GFF6616 0.83 -1.0
61,165 - GFF6616 0.84 -0.5
61,165 - GFF6616 0.84 -1.6
61,165 - GFF6616 0.84 +0.3
61,165 - GFF6616 0.84 +0.6
61,165 - GFF6616 0.84 -0.9
61,165 - GFF6616 0.84 -3.5
61,170 + GFF6616 0.84 -2.0
61,349 - -1.4

Or see this region's nucleotide sequence