Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6541 and GFF6542 are separated by 183 nucleotides GFF6542 and GFF6543 overlap by 4 nucleotides GFF6543 and GFF6544 are separated by 90 nucleotides
GFF6541 - Oxidoreductase, short-chain dehydrogenase/reductase family, at 38,459 to 39,262
GFF6541
GFF6542 - Transcriptional regulator, AcrR family, at 39,446 to 40,162
GFF6542
GFF6543 - Transcriptional regulator, LysR family, at 40,159 to 41,133
GFF6543
GFF6544 - D-Lactate dehydrogenase, cytochrome c-dependent (EC 1.1.2.4), at 41,224 to 42,630
GFF6544
Position (kb) 40
41
42 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 39.280 kb on + strand at 39.281 kb on - strand at 39.307 kb on + strand at 39.410 kb on + strand at 39.411 kb on - strand at 39.411 kb on - strand at 39.411 kb on - strand at 39.432 kb on + strand at 39.433 kb on - strand at 39.590 kb on + strand, within GFF6542 at 39.591 kb on - strand, within GFF6542 at 39.654 kb on - strand, within GFF6542 at 39.654 kb on - strand, within GFF6542 at 39.656 kb on + strand, within GFF6542 at 39.656 kb on + strand, within GFF6542 at 39.656 kb on + strand, within GFF6542 at 39.656 kb on + strand, within GFF6542 at 39.656 kb on + strand, within GFF6542 at 39.701 kb on + strand, within GFF6542 at 39.702 kb on - strand, within GFF6542 at 39.702 kb on - strand, within GFF6542 at 39.725 kb on + strand, within GFF6542 at 39.725 kb on + strand, within GFF6542 at 39.726 kb on - strand, within GFF6542 at 39.726 kb on - strand, within GFF6542 at 39.834 kb on - strand, within GFF6542 at 39.983 kb on + strand, within GFF6542 at 39.984 kb on - strand, within GFF6542 at 39.984 kb on - strand, within GFF6542 at 40.160 kb on + strand at 40.448 kb on + strand, within GFF6543 at 40.934 kb on + strand, within GFF6543 at 40.934 kb on + strand, within GFF6543 at 40.935 kb on - strand, within GFF6543 at 40.941 kb on - strand, within GFF6543 at 41.140 kb on - strand at 41.187 kb on - strand at 41.330 kb on + strand at 41.330 kb on + strand at 41.330 kb on + strand at 41.330 kb on + strand at 41.331 kb on - strand at 41.331 kb on - strand at 41.331 kb on - strand at 41.633 kb on + strand, within GFF6544 at 41.633 kb on + strand, within GFF6544 at 41.633 kb on + strand, within GFF6544 at 41.633 kb on + strand, within GFF6544 at 41.634 kb on - strand, within GFF6544 at 41.948 kb on + strand, within GFF6544 at 41.948 kb on + strand, within GFF6544 at 41.948 kb on + strand, within GFF6544 at 41.948 kb on + strand, within GFF6544 at 41.949 kb on - strand, within GFF6544 at 41.949 kb on - strand, within GFF6544 at 41.949 kb on - strand, within GFF6544 at 41.949 kb on - strand, within GFF6544 at 41.949 kb on - strand, within GFF6544 at 42.020 kb on + strand, within GFF6544 at 42.021 kb on - strand, within GFF6544 at 42.038 kb on + strand, within GFF6544 at 42.038 kb on + strand, within GFF6544 at 42.039 kb on - strand, within GFF6544 at 42.039 kb on - strand, within GFF6544 at 42.039 kb on - strand, within GFF6544 at 42.039 kb on - strand, within GFF6544 at 42.039 kb on - strand, within GFF6544
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 39,280 + +1.1 39,281 - +0.2 39,307 + -1.0 39,410 + +0.4 39,411 - -0.5 39,411 - +1.9 39,411 - -1.2 39,432 + -0.4 39,433 - +0.6 39,590 + GFF6542 0.20 +2.1 39,591 - GFF6542 0.20 -2.8 39,654 - GFF6542 0.29 -0.4 39,654 - GFF6542 0.29 +0.3 39,656 + GFF6542 0.29 -1.4 39,656 + GFF6542 0.29 -3.1 39,656 + GFF6542 0.29 -1.5 39,656 + GFF6542 0.29 -1.4 39,656 + GFF6542 0.29 -1.3 39,701 + GFF6542 0.36 -1.5 39,702 - GFF6542 0.36 -4.3 39,702 - GFF6542 0.36 +1.6 39,725 + GFF6542 0.39 +0.5 39,725 + GFF6542 0.39 +0.7 39,726 - GFF6542 0.39 -0.4 39,726 - GFF6542 0.39 +0.6 39,834 - GFF6542 0.54 +1.0 39,983 + GFF6542 0.75 -2.3 39,984 - GFF6542 0.75 -2.5 39,984 - GFF6542 0.75 -0.6 40,160 + +0.6 40,448 + GFF6543 0.30 -1.1 40,934 + GFF6543 0.79 -1.2 40,934 + GFF6543 0.79 +0.9 40,935 - GFF6543 0.80 -1.0 40,941 - GFF6543 0.80 +0.2 41,140 - +2.4 41,187 - +0.4 41,330 + -1.6 41,330 + -1.1 41,330 + -1.9 41,330 + -3.2 41,331 - -0.2 41,331 - -0.4 41,331 - -1.7 41,633 + GFF6544 0.29 -1.0 41,633 + GFF6544 0.29 +0.0 41,633 + GFF6544 0.29 -0.4 41,633 + GFF6544 0.29 +1.7 41,634 - GFF6544 0.29 -2.2 41,948 + GFF6544 0.51 -1.6 41,948 + GFF6544 0.51 +2.4 41,948 + GFF6544 0.51 +0.9 41,948 + GFF6544 0.51 -0.4 41,949 - GFF6544 0.52 -1.8 41,949 - GFF6544 0.52 -0.8 41,949 - GFF6544 0.52 -1.2 41,949 - GFF6544 0.52 +1.5 41,949 - GFF6544 0.52 +0.6 42,020 + GFF6544 0.57 -2.9 42,021 - GFF6544 0.57 -2.5 42,038 + GFF6544 0.58 +1.6 42,038 + GFF6544 0.58 +1.7 42,039 - GFF6544 0.58 -0.7 42,039 - GFF6544 0.58 -1.6 42,039 - GFF6544 0.58 -1.3 42,039 - GFF6544 0.58 +0.9 42,039 - GFF6544 0.58 -1.4
Or see this region's nucleotide sequence