Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF652 and GFF653 overlap by 4 nucleotides GFF653 and GFF654 are separated by 156 nucleotides GFF654 and GFF655 are separated by 18 nucleotides GFF655 and GFF656 are separated by 14 nucleotides
GFF652 - bacteriophytochrome heme oxygenase BphO, at 704,267 to 704,905
GFF652
GFF653 - no description, at 704,902 to 705,318
GFF653
GFF654 - ABC transporter, substrate-binding protein (cluster 3, basic aa/glutamine/opines), at 705,475 to 706,236
GFF654
GFF655 - hypothetical protein, at 706,255 to 706,674
GFF655
GFF656 - macromolecule metabolism; macromolecule degradation; degradation of proteins, peptides, glycopeptides, at 706,689 to 708,935
GFF656
Position (kb) 705
706
707 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 704.521 kb on - strand, within GFF652 at 704.521 kb on - strand, within GFF652 at 704.521 kb on - strand, within GFF652 at 704.521 kb on - strand, within GFF652 at 704.521 kb on - strand, within GFF652 at 704.645 kb on + strand, within GFF652 at 704.646 kb on - strand, within GFF652 at 704.778 kb on + strand, within GFF652 at 704.779 kb on - strand, within GFF652 at 704.779 kb on - strand, within GFF652 at 704.779 kb on - strand, within GFF652 at 705.059 kb on + strand, within GFF653 at 705.059 kb on + strand, within GFF653 at 705.059 kb on + strand, within GFF653 at 705.059 kb on + strand, within GFF653 at 705.059 kb on + strand, within GFF653 at 705.060 kb on - strand, within GFF653 at 705.060 kb on - strand, within GFF653 at 705.060 kb on - strand, within GFF653 at 705.060 kb on - strand, within GFF653 at 705.357 kb on + strand at 705.357 kb on + strand at 705.358 kb on - strand at 705.397 kb on + strand at 705.397 kb on + strand at 705.397 kb on + strand at 705.398 kb on - strand at 705.398 kb on - strand at 705.398 kb on - strand at 705.398 kb on - strand at 705.398 kb on - strand at 705.398 kb on - strand at 705.413 kb on + strand at 705.413 kb on + strand at 705.413 kb on + strand at 705.414 kb on - strand at 705.414 kb on - strand at 705.793 kb on + strand, within GFF654 at 705.793 kb on + strand, within GFF654 at 705.793 kb on + strand, within GFF654 at 705.793 kb on + strand, within GFF654 at 705.794 kb on - strand, within GFF654 at 705.794 kb on - strand, within GFF654 at 705.794 kb on - strand, within GFF654 at 705.794 kb on - strand, within GFF654 at 705.814 kb on + strand, within GFF654 at 705.815 kb on - strand, within GFF654 at 705.815 kb on - strand, within GFF654 at 705.815 kb on - strand, within GFF654 at 705.901 kb on + strand, within GFF654 at 705.901 kb on + strand, within GFF654 at 706.243 kb on + strand at 706.265 kb on + strand at 706.265 kb on + strand at 706.266 kb on - strand at 706.289 kb on + strand at 706.500 kb on - strand, within GFF655 at 706.500 kb on - strand, within GFF655 at 706.500 kb on - strand, within GFF655 at 706.562 kb on + strand, within GFF655 at 706.563 kb on - strand, within GFF655 at 706.563 kb on - strand, within GFF655 at 706.563 kb on - strand, within GFF655 at 706.563 kb on - strand, within GFF655 at 706.699 kb on + strand at 706.747 kb on + strand at 706.748 kb on - strand at 706.856 kb on - strand at 706.984 kb on + strand, within GFF656 at 706.984 kb on + strand, within GFF656 at 706.985 kb on - strand, within GFF656 at 706.996 kb on + strand, within GFF656 at 706.996 kb on + strand, within GFF656 at 706.996 kb on + strand, within GFF656 at 706.997 kb on - strand, within GFF656 at 706.997 kb on - strand, within GFF656 at 706.997 kb on - strand, within GFF656 at 706.997 kb on - strand, within GFF656 at 706.999 kb on + strand, within GFF656 at 706.999 kb on + strand, within GFF656 at 706.999 kb on + strand, within GFF656 at 706.999 kb on + strand, within GFF656 at 707.000 kb on - strand, within GFF656 at 707.000 kb on - strand, within GFF656 at 707.000 kb on - strand, within GFF656 at 707.188 kb on + strand, within GFF656 at 707.188 kb on + strand, within GFF656 at 707.188 kb on + strand, within GFF656 at 707.188 kb on + strand, within GFF656 at 707.189 kb on - strand, within GFF656 at 707.189 kb on - strand, within GFF656 at 707.189 kb on - strand, within GFF656 at 707.189 kb on - strand, within GFF656 at 707.189 kb on - strand, within GFF656
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 704,521 - GFF652 0.40 +0.5 704,521 - GFF652 0.40 +0.4 704,521 - GFF652 0.40 -1.6 704,521 - GFF652 0.40 +1.5 704,521 - GFF652 0.40 +1.0 704,645 + GFF652 0.59 +0.3 704,646 - GFF652 0.59 +0.0 704,778 + GFF652 0.80 +1.9 704,779 - GFF652 0.80 -0.5 704,779 - GFF652 0.80 -2.0 704,779 - GFF652 0.80 -2.0 705,059 + GFF653 0.38 +1.3 705,059 + GFF653 0.38 -2.4 705,059 + GFF653 0.38 -1.2 705,059 + GFF653 0.38 -2.5 705,059 + GFF653 0.38 -2.8 705,060 - GFF653 0.38 +0.6 705,060 - GFF653 0.38 -1.1 705,060 - GFF653 0.38 -0.8 705,060 - GFF653 0.38 -0.6 705,357 + -1.0 705,357 + -4.0 705,358 - +0.8 705,397 + -3.0 705,397 + -1.0 705,397 + -1.3 705,398 - +0.6 705,398 - -2.2 705,398 - -0.7 705,398 - -1.9 705,398 - -3.5 705,398 - -2.6 705,413 + -1.7 705,413 + +0.3 705,413 + +1.3 705,414 - -0.5 705,414 - -1.9 705,793 + GFF654 0.42 -1.7 705,793 + GFF654 0.42 +1.2 705,793 + GFF654 0.42 +0.5 705,793 + GFF654 0.42 -1.5 705,794 - GFF654 0.42 +0.3 705,794 - GFF654 0.42 +0.6 705,794 - GFF654 0.42 -0.8 705,794 - GFF654 0.42 -0.2 705,814 + GFF654 0.44 -1.9 705,815 - GFF654 0.45 -4.1 705,815 - GFF654 0.45 -0.3 705,815 - GFF654 0.45 +1.4 705,901 + GFF654 0.56 -3.2 705,901 + GFF654 0.56 -3.2 706,243 + -1.0 706,265 + +0.3 706,265 + -1.6 706,266 - +0.1 706,289 + +1.0 706,500 - GFF655 0.58 -1.5 706,500 - GFF655 0.58 -0.5 706,500 - GFF655 0.58 -2.7 706,562 + GFF655 0.73 +0.7 706,563 - GFF655 0.73 +0.2 706,563 - GFF655 0.73 +1.6 706,563 - GFF655 0.73 -3.8 706,563 - GFF655 0.73 -0.9 706,699 + +0.6 706,747 + +0.9 706,748 - +4.0 706,856 - -2.8 706,984 + GFF656 0.13 -0.6 706,984 + GFF656 0.13 +0.0 706,985 - GFF656 0.13 -2.0 706,996 + GFF656 0.14 -0.7 706,996 + GFF656 0.14 +0.4 706,996 + GFF656 0.14 +1.9 706,997 - GFF656 0.14 -0.3 706,997 - GFF656 0.14 +3.0 706,997 - GFF656 0.14 -1.1 706,997 - GFF656 0.14 -0.5 706,999 + GFF656 0.14 -0.7 706,999 + GFF656 0.14 -0.1 706,999 + GFF656 0.14 +0.3 706,999 + GFF656 0.14 -1.5 707,000 - GFF656 0.14 -2.6 707,000 - GFF656 0.14 +1.6 707,000 - GFF656 0.14 -0.7 707,188 + GFF656 0.22 -0.3 707,188 + GFF656 0.22 +0.1 707,188 + GFF656 0.22 +1.3 707,188 + GFF656 0.22 -0.7 707,189 - GFF656 0.22 -1.7 707,189 - GFF656 0.22 +0.8 707,189 - GFF656 0.22 -1.3 707,189 - GFF656 0.22 +0.5 707,189 - GFF656 0.22 -2.4
Or see this region's nucleotide sequence