Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6450 and GFF6451 overlap by 4 nucleotides GFF6451 and GFF6452 are separated by 11 nucleotides
GFF6450 - Ethanolamine ammonia-lyase heavy chain (EC 4.3.1.7), at 26,628 to 28,022
GFF6450
GFF6451 - Ethanolamine ammonia-lyase light chain (EC 4.3.1.7), at 28,019 to 28,774
GFF6451
GFF6452 - Putative diheme cytochrome c-553, at 28,786 to 30,180
GFF6452
Position (kb) 28
29 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 27.175 kb on - strand, within GFF6450 at 27.175 kb on - strand, within GFF6450 at 27.483 kb on + strand, within GFF6450 at 27.483 kb on + strand, within GFF6450 at 27.483 kb on + strand, within GFF6450 at 27.483 kb on + strand, within GFF6450 at 27.483 kb on + strand, within GFF6450 at 27.483 kb on + strand, within GFF6450 at 27.484 kb on - strand, within GFF6450 at 27.484 kb on - strand, within GFF6450 at 27.484 kb on - strand, within GFF6450 at 27.484 kb on - strand, within GFF6450 at 27.484 kb on - strand, within GFF6450 at 27.484 kb on - strand, within GFF6450 at 27.565 kb on - strand, within GFF6450 at 27.582 kb on + strand, within GFF6450 at 27.582 kb on + strand, within GFF6450 at 27.582 kb on + strand, within GFF6450 at 27.631 kb on - strand, within GFF6450 at 27.631 kb on - strand, within GFF6450 at 27.636 kb on + strand, within GFF6450 at 27.723 kb on + strand, within GFF6450 at 27.724 kb on - strand, within GFF6450 at 27.724 kb on - strand, within GFF6450 at 27.841 kb on - strand, within GFF6450 at 28.265 kb on + strand, within GFF6451 at 28.265 kb on + strand, within GFF6451 at 28.266 kb on - strand, within GFF6451 at 28.266 kb on - strand, within GFF6451 at 28.266 kb on - strand, within GFF6451 at 28.266 kb on - strand, within GFF6451 at 28.266 kb on - strand, within GFF6451 at 28.266 kb on - strand, within GFF6451 at 28.297 kb on - strand, within GFF6451 at 28.338 kb on - strand, within GFF6451 at 28.586 kb on + strand, within GFF6451 at 28.586 kb on + strand, within GFF6451 at 28.586 kb on + strand, within GFF6451 at 28.587 kb on - strand, within GFF6451 at 28.648 kb on - strand, within GFF6451 at 28.667 kb on + strand, within GFF6451 at 28.667 kb on + strand, within GFF6451 at 28.667 kb on + strand, within GFF6451 at 28.668 kb on - strand, within GFF6451 at 28.668 kb on - strand, within GFF6451 at 28.668 kb on - strand, within GFF6451 at 28.668 kb on - strand, within GFF6451 at 28.668 kb on - strand, within GFF6451 at 28.772 kb on + strand at 28.773 kb on - strand at 29.126 kb on + strand, within GFF6452 at 29.127 kb on - strand, within GFF6452 at 29.127 kb on - strand, within GFF6452 at 29.264 kb on + strand, within GFF6452 at 29.264 kb on + strand, within GFF6452 at 29.264 kb on + strand, within GFF6452 at 29.264 kb on + strand, within GFF6452 at 29.265 kb on - strand, within GFF6452 at 29.265 kb on - strand, within GFF6452 at 29.265 kb on - strand, within GFF6452 at 29.445 kb on - strand, within GFF6452 at 29.533 kb on - strand, within GFF6452 at 29.570 kb on + strand, within GFF6452 at 29.571 kb on - strand, within GFF6452 at 29.615 kb on + strand, within GFF6452 at 29.634 kb on - strand, within GFF6452
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 27,175 - GFF6450 0.39 +1.0 27,175 - GFF6450 0.39 -0.2 27,483 + GFF6450 0.61 +1.7 27,483 + GFF6450 0.61 -3.9 27,483 + GFF6450 0.61 -1.0 27,483 + GFF6450 0.61 +1.0 27,483 + GFF6450 0.61 -2.6 27,483 + GFF6450 0.61 +0.8 27,484 - GFF6450 0.61 +0.7 27,484 - GFF6450 0.61 -3.0 27,484 - GFF6450 0.61 +0.3 27,484 - GFF6450 0.61 -1.2 27,484 - GFF6450 0.61 +0.2 27,484 - GFF6450 0.61 +0.4 27,565 - GFF6450 0.67 +1.4 27,582 + GFF6450 0.68 +2.2 27,582 + GFF6450 0.68 +0.8 27,582 + GFF6450 0.68 +1.7 27,631 - GFF6450 0.72 -2.3 27,631 - GFF6450 0.72 +1.6 27,636 + GFF6450 0.72 +1.5 27,723 + GFF6450 0.78 -0.7 27,724 - GFF6450 0.79 -2.9 27,724 - GFF6450 0.79 +0.6 27,841 - GFF6450 0.87 +0.6 28,265 + GFF6451 0.33 -0.8 28,265 + GFF6451 0.33 +1.1 28,266 - GFF6451 0.33 +1.6 28,266 - GFF6451 0.33 +1.6 28,266 - GFF6451 0.33 -1.4 28,266 - GFF6451 0.33 -0.4 28,266 - GFF6451 0.33 +1.3 28,266 - GFF6451 0.33 -1.0 28,297 - GFF6451 0.37 +1.5 28,338 - GFF6451 0.42 -1.5 28,586 + GFF6451 0.75 +0.8 28,586 + GFF6451 0.75 -1.2 28,586 + GFF6451 0.75 -1.2 28,587 - GFF6451 0.75 -0.4 28,648 - GFF6451 0.83 +0.0 28,667 + GFF6451 0.86 -2.5 28,667 + GFF6451 0.86 -2.3 28,667 + GFF6451 0.86 -2.8 28,668 - GFF6451 0.86 -0.9 28,668 - GFF6451 0.86 -0.8 28,668 - GFF6451 0.86 -1.5 28,668 - GFF6451 0.86 +1.3 28,668 - GFF6451 0.86 +1.0 28,772 + +0.8 28,773 - +0.2 29,126 + GFF6452 0.24 -2.4 29,127 - GFF6452 0.24 -0.4 29,127 - GFF6452 0.24 +0.6 29,264 + GFF6452 0.34 -2.0 29,264 + GFF6452 0.34 -1.9 29,264 + GFF6452 0.34 +1.4 29,264 + GFF6452 0.34 +1.4 29,265 - GFF6452 0.34 -3.7 29,265 - GFF6452 0.34 -0.3 29,265 - GFF6452 0.34 -1.7 29,445 - GFF6452 0.47 +1.4 29,533 - GFF6452 0.54 -2.2 29,570 + GFF6452 0.56 -0.4 29,571 - GFF6452 0.56 -2.9 29,615 + GFF6452 0.59 -0.5 29,634 - GFF6452 0.61 +0.9
Or see this region's nucleotide sequence