Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6437 and GFF6438 are separated by 11 nucleotides GFF6438 and GFF6439 are separated by 153 nucleotides GFF6439 and GFF6440 are separated by 9 nucleotides GFF6440 and GFF6441 are separated by 66 nucleotides GFF6441 and GFF6442 overlap by 1 nucleotides
GFF6437 - no description, at 14,797 to 15,510
GFF6437
GFF6438 - hypothetical protein, at 15,522 to 15,938
GFF6438
GFF6439 - Transcriptional regulator, LysR family, at 16,092 to 17,009
GFF6439
GFF6440 - Molybdate-binding domain of ModE, at 17,019 to 17,228
GFF6440
GFF6441 - hypothetical protein, at 17,295 to 17,672
GFF6441
GFF6442 - Aldehyde dehydrogenase (EC 1.2.1.3), at 17,672 to 19,192
GFF6442
Position (kb) 16
17
18 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 15.173 kb on + strand, within GFF6437 at 15.174 kb on - strand, within GFF6437 at 15.293 kb on + strand, within GFF6437 at 15.293 kb on + strand, within GFF6437 at 15.293 kb on + strand, within GFF6437 at 15.294 kb on - strand, within GFF6437 at 15.294 kb on - strand, within GFF6437 at 15.420 kb on - strand, within GFF6437 at 15.420 kb on - strand, within GFF6437 at 15.420 kb on - strand, within GFF6437 at 15.420 kb on - strand, within GFF6437 at 15.420 kb on - strand, within GFF6437 at 15.420 kb on - strand, within GFF6437 at 15.420 kb on - strand, within GFF6437 at 15.523 kb on + strand at 15.524 kb on - strand at 15.524 kb on - strand at 15.640 kb on + strand, within GFF6438 at 15.640 kb on + strand, within GFF6438 at 15.640 kb on + strand, within GFF6438 at 15.640 kb on + strand, within GFF6438 at 15.641 kb on - strand, within GFF6438 at 15.641 kb on - strand, within GFF6438 at 15.754 kb on + strand, within GFF6438 at 15.755 kb on - strand, within GFF6438 at 15.755 kb on - strand, within GFF6438 at 15.938 kb on + strand at 15.938 kb on + strand at 15.938 kb on + strand at 15.938 kb on + strand at 15.938 kb on + strand at 15.938 kb on + strand at 15.939 kb on - strand at 15.939 kb on - strand at 15.939 kb on - strand at 15.939 kb on - strand at 15.939 kb on - strand at 15.939 kb on - strand at 15.948 kb on + strand at 15.948 kb on + strand at 15.948 kb on + strand at 15.995 kb on + strand at 15.998 kb on - strand at 15.998 kb on - strand at 15.999 kb on - strand at 16.012 kb on - strand at 16.012 kb on - strand at 16.012 kb on - strand at 16.372 kb on - strand, within GFF6439 at 16.576 kb on - strand, within GFF6439 at 17.007 kb on + strand at 17.062 kb on + strand, within GFF6440 at 17.062 kb on + strand, within GFF6440 at 17.062 kb on + strand, within GFF6440 at 17.296 kb on + strand at 17.300 kb on + strand at 17.300 kb on + strand at 17.300 kb on + strand at 17.300 kb on + strand at 17.300 kb on + strand at 17.300 kb on + strand at 17.301 kb on - strand at 17.301 kb on - strand at 17.301 kb on - strand at 17.301 kb on - strand at 17.301 kb on - strand at 17.301 kb on - strand at 17.301 kb on - strand at 17.301 kb on - strand at 17.301 kb on - strand at 17.470 kb on + strand, within GFF6441 at 17.471 kb on - strand, within GFF6441 at 17.539 kb on + strand, within GFF6441 at 17.700 kb on + strand at 17.730 kb on + strand at 17.731 kb on - strand at 17.781 kb on + strand at 17.817 kb on + strand at 17.817 kb on - strand at 17.818 kb on - strand at 17.818 kb on - strand at 17.911 kb on - strand, within GFF6442 at 17.911 kb on - strand, within GFF6442
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 15,173 + GFF6437 0.53 +1.4 15,174 - GFF6437 0.53 -0.7 15,293 + GFF6437 0.69 -2.1 15,293 + GFF6437 0.69 +0.8 15,293 + GFF6437 0.69 -1.4 15,294 - GFF6437 0.70 -0.6 15,294 - GFF6437 0.70 +1.2 15,420 - GFF6437 0.87 -1.4 15,420 - GFF6437 0.87 +1.4 15,420 - GFF6437 0.87 +0.2 15,420 - GFF6437 0.87 -1.6 15,420 - GFF6437 0.87 -0.3 15,420 - GFF6437 0.87 -3.0 15,420 - GFF6437 0.87 -1.7 15,523 + -1.0 15,524 - -1.8 15,524 - +2.3 15,640 + GFF6438 0.28 -1.0 15,640 + GFF6438 0.28 -0.1 15,640 + GFF6438 0.28 -1.3 15,640 + GFF6438 0.28 +2.4 15,641 - GFF6438 0.29 +1.6 15,641 - GFF6438 0.29 -0.4 15,754 + GFF6438 0.56 +1.5 15,755 - GFF6438 0.56 -0.1 15,755 - GFF6438 0.56 -3.0 15,938 + +0.3 15,938 + -0.8 15,938 + -2.8 15,938 + -0.4 15,938 + -0.7 15,938 + -0.4 15,939 - +2.1 15,939 - -1.6 15,939 - +0.7 15,939 - -1.9 15,939 - -0.8 15,939 - -0.4 15,948 + +0.9 15,948 + -0.4 15,948 + -0.1 15,995 + +0.2 15,998 - -0.7 15,998 - -1.2 15,999 - +0.5 16,012 - -3.3 16,012 - -1.9 16,012 - -1.0 16,372 - GFF6439 0.31 -0.6 16,576 - GFF6439 0.53 -0.3 17,007 + -1.2 17,062 + GFF6440 0.20 -2.1 17,062 + GFF6440 0.20 +0.1 17,062 + GFF6440 0.20 +0.6 17,296 + +0.7 17,300 + -1.9 17,300 + +0.4 17,300 + +1.0 17,300 + +0.0 17,300 + -2.7 17,300 + +0.6 17,301 - -1.0 17,301 - -1.4 17,301 - +0.5 17,301 - -0.9 17,301 - +2.1 17,301 - -0.4 17,301 - -1.4 17,301 - +2.3 17,301 - -1.4 17,470 + GFF6441 0.46 +0.1 17,471 - GFF6441 0.47 +0.2 17,539 + GFF6441 0.65 +0.9 17,700 + -0.3 17,730 + -0.6 17,731 - -2.7 17,781 + +2.3 17,817 + +0.2 17,817 - +0.2 17,818 - -1.2 17,818 - -0.4 17,911 - GFF6442 0.16 +1.1 17,911 - GFF6442 0.16 -2.4
Or see this region's nucleotide sequence