Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6379 and GFF6380 overlap by 4 nucleotides GFF6380 and GFF6381 overlap by 4 nucleotides GFF6381 and GFF6382 are separated by 81 nucleotides
GFF6379 - ABC transporter, ATP-binding protein 2 (cluster 4, leucine/isoleucine/valine/benzoate), at 51,207 to 51,941
GFF6379
GFF6380 - ABC transporter, ATP-binding protein 1 (cluster 4, leucine/isoleucine/valine/benzoate), at 51,938 to 52,729
GFF6380
GFF6381 - ABC transporter, permease protein 1 (cluster 4, leucine/isoleucine/valine/benzoate) / ABC transporter, permease protein 2 (cluster 4, leucine/isoleucine/valine/benzoate), at 52,726 to 54,657
GFF6381
GFF6382 - ABC transporter, substrate-binding protein (cluster 4, leucine/isoleucine/valine/benzoate), at 54,739 to 55,944
GFF6382
Position (kb) 52
53
54
55 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 52.006 kb on - strand at 52.098 kb on + strand, within GFF6380 at 52.291 kb on - strand, within GFF6380 at 52.881 kb on - strand at 52.923 kb on + strand, within GFF6381 at 52.924 kb on - strand, within GFF6381 at 53.046 kb on - strand, within GFF6381 at 53.240 kb on + strand, within GFF6381 at 53.243 kb on + strand, within GFF6381 at 53.243 kb on + strand, within GFF6381 at 53.243 kb on + strand, within GFF6381 at 53.244 kb on - strand, within GFF6381 at 53.244 kb on - strand, within GFF6381 at 53.376 kb on - strand, within GFF6381 at 53.502 kb on - strand, within GFF6381 at 53.693 kb on + strand, within GFF6381 at 53.921 kb on + strand, within GFF6381 at 53.921 kb on + strand, within GFF6381 at 53.921 kb on + strand, within GFF6381 at 54.225 kb on - strand, within GFF6381 at 54.383 kb on + strand, within GFF6381 at 54.383 kb on + strand, within GFF6381 at 54.501 kb on - strand at 54.501 kb on - strand at 54.509 kb on + strand at 54.509 kb on + strand at 54.509 kb on + strand at 54.510 kb on - strand at 54.510 kb on - strand at 54.510 kb on - strand at 54.510 kb on - strand at 54.510 kb on - strand at 54.510 kb on - strand at 54.510 kb on - strand at 54.803 kb on + strand at 54.809 kb on + strand at 54.857 kb on + strand at 54.893 kb on + strand, within GFF6382 at 55.010 kb on + strand, within GFF6382 at 55.011 kb on - strand, within GFF6382 at 55.011 kb on - strand, within GFF6382 at 55.038 kb on - strand, within GFF6382 at 55.059 kb on - strand, within GFF6382 at 55.101 kb on - strand, within GFF6382 at 55.160 kb on + strand, within GFF6382 at 55.398 kb on + strand, within GFF6382 at 55.424 kb on + strand, within GFF6382 at 55.425 kb on - strand, within GFF6382 at 55.425 kb on - strand, within GFF6382 at 55.500 kb on - strand, within GFF6382 at 55.500 kb on - strand, within GFF6382 at 55.520 kb on + strand, within GFF6382 at 55.521 kb on - strand, within GFF6382 at 55.521 kb on - strand, within GFF6382 at 55.521 kb on - strand, within GFF6382 at 55.526 kb on + strand, within GFF6382 at 55.526 kb on + strand, within GFF6382 at 55.527 kb on - strand, within GFF6382 at 55.527 kb on - strand, within GFF6382 at 55.527 kb on - strand, within GFF6382 at 55.527 kb on - strand, within GFF6382 at 55.527 kb on - strand, within GFF6382 at 55.527 kb on - strand, within GFF6382 at 55.527 kb on - strand, within GFF6382 at 55.580 kb on + strand, within GFF6382
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 52,006 - -1.2 52,098 + GFF6380 0.20 -0.9 52,291 - GFF6380 0.45 -1.7 52,881 - -2.5 52,923 + GFF6381 0.10 -1.7 52,924 - GFF6381 0.10 -3.2 53,046 - GFF6381 0.17 -0.7 53,240 + GFF6381 0.27 -1.3 53,243 + GFF6381 0.27 +1.1 53,243 + GFF6381 0.27 -2.1 53,243 + GFF6381 0.27 +0.1 53,244 - GFF6381 0.27 +0.4 53,244 - GFF6381 0.27 -2.8 53,376 - GFF6381 0.34 -3.4 53,502 - GFF6381 0.40 +0.4 53,693 + GFF6381 0.50 -0.2 53,921 + GFF6381 0.62 -2.2 53,921 + GFF6381 0.62 -2.6 53,921 + GFF6381 0.62 -0.7 54,225 - GFF6381 0.78 -1.1 54,383 + GFF6381 0.86 -0.4 54,383 + GFF6381 0.86 +0.1 54,501 - -1.4 54,501 - +0.3 54,509 + +1.5 54,509 + +0.3 54,509 + -1.6 54,510 - -2.2 54,510 - -1.6 54,510 - -1.3 54,510 - +0.1 54,510 - +0.1 54,510 - -3.0 54,510 - +0.1 54,803 + -1.6 54,809 + -2.1 54,857 + -1.6 54,893 + GFF6382 0.13 -1.8 55,010 + GFF6382 0.22 -2.1 55,011 - GFF6382 0.23 -3.2 55,011 - GFF6382 0.23 -1.7 55,038 - GFF6382 0.25 -1.2 55,059 - GFF6382 0.27 -0.9 55,101 - GFF6382 0.30 -0.1 55,160 + GFF6382 0.35 -1.8 55,398 + GFF6382 0.55 +0.4 55,424 + GFF6382 0.57 -2.9 55,425 - GFF6382 0.57 -4.3 55,425 - GFF6382 0.57 -0.1 55,500 - GFF6382 0.63 +0.4 55,500 - GFF6382 0.63 -1.6 55,520 + GFF6382 0.65 -2.2 55,521 - GFF6382 0.65 -2.5 55,521 - GFF6382 0.65 -2.1 55,521 - GFF6382 0.65 -1.0 55,526 + GFF6382 0.65 +0.8 55,526 + GFF6382 0.65 +0.1 55,527 - GFF6382 0.65 -0.2 55,527 - GFF6382 0.65 -1.1 55,527 - GFF6382 0.65 -0.9 55,527 - GFF6382 0.65 -1.4 55,527 - GFF6382 0.65 +0.4 55,527 - GFF6382 0.65 -1.8 55,527 - GFF6382 0.65 -1.3 55,580 + GFF6382 0.70 -1.2
Or see this region's nucleotide sequence