Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6223 and GFF6224 overlap by 4 nucleotides GFF6224 and GFF6225 are separated by 130 nucleotides
GFF6223 - T6SS outer membrane component TssL (ImpK/VasF) / OmpA/MotB domain, at 4,336 to 5,664
GFF6223
GFF6224 - T6SS component TssK (ImpJ/VasE), at 5,661 to 6,992
GFF6224
GFF6225 - ABC transporter, substrate-binding protein (cluster 12, methionine/phosphonates), at 7,123 to 8,187
GFF6225
Position (kb) 5
6
7 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4.862 kb on + strand, within GFF6223 at 4.862 kb on + strand, within GFF6223 at 4.862 kb on + strand, within GFF6223 at 4.862 kb on + strand, within GFF6223 at 4.862 kb on + strand, within GFF6223 at 4.862 kb on + strand, within GFF6223 at 4.862 kb on + strand, within GFF6223 at 4.862 kb on + strand, within GFF6223 at 4.862 kb on + strand, within GFF6223 at 4.863 kb on - strand, within GFF6223 at 4.863 kb on - strand, within GFF6223 at 4.880 kb on + strand, within GFF6223 at 4.880 kb on + strand, within GFF6223 at 4.881 kb on - strand, within GFF6223 at 5.141 kb on + strand, within GFF6223 at 5.141 kb on + strand, within GFF6223 at 5.141 kb on + strand, within GFF6223 at 5.141 kb on + strand, within GFF6223 at 5.142 kb on - strand, within GFF6223 at 5.327 kb on + strand, within GFF6223 at 5.328 kb on - strand, within GFF6223 at 5.328 kb on - strand, within GFF6223 at 5.785 kb on + strand at 5.786 kb on - strand at 6.133 kb on + strand, within GFF6224 at 6.133 kb on + strand, within GFF6224 at 6.133 kb on + strand, within GFF6224 at 6.133 kb on + strand, within GFF6224 at 6.134 kb on - strand, within GFF6224 at 6.134 kb on - strand, within GFF6224 at 6.134 kb on - strand, within GFF6224 at 6.644 kb on - strand, within GFF6224 at 6.644 kb on - strand, within GFF6224 at 6.872 kb on - strand at 6.872 kb on - strand at 7.072 kb on - strand at 7.079 kb on - strand at 7.112 kb on + strand at 7.112 kb on + strand at 7.113 kb on - strand at 7.163 kb on + strand at 7.163 kb on + strand at 7.163 kb on + strand at 7.163 kb on + strand at 7.164 kb on - strand at 7.164 kb on - strand at 7.165 kb on + strand at 7.250 kb on + strand, within GFF6225 at 7.250 kb on + strand, within GFF6225 at 7.298 kb on + strand, within GFF6225 at 7.305 kb on - strand, within GFF6225 at 7.916 kb on + strand, within GFF6225 at 7.916 kb on + strand, within GFF6225 at 7.916 kb on + strand, within GFF6225 at 7.916 kb on + strand, within GFF6225 at 7.917 kb on - strand, within GFF6225 at 7.917 kb on - strand, within GFF6225 at 7.917 kb on - strand, within GFF6225 at 7.931 kb on + strand, within GFF6225 at 7.931 kb on + strand, within GFF6225 at 7.932 kb on - strand, within GFF6225 at 7.932 kb on - strand, within GFF6225
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 4,862 + GFF6223 0.40 -2.2 4,862 + GFF6223 0.40 +2.0 4,862 + GFF6223 0.40 -3.5 4,862 + GFF6223 0.40 -0.2 4,862 + GFF6223 0.40 -2.0 4,862 + GFF6223 0.40 -0.3 4,862 + GFF6223 0.40 -0.3 4,862 + GFF6223 0.40 -0.2 4,862 + GFF6223 0.40 -3.6 4,863 - GFF6223 0.40 -0.7 4,863 - GFF6223 0.40 +1.1 4,880 + GFF6223 0.41 -1.9 4,880 + GFF6223 0.41 +0.9 4,881 - GFF6223 0.41 -0.8 5,141 + GFF6223 0.61 -1.4 5,141 + GFF6223 0.61 +1.3 5,141 + GFF6223 0.61 -0.6 5,141 + GFF6223 0.61 +0.7 5,142 - GFF6223 0.61 -2.5 5,327 + GFF6223 0.75 -3.4 5,328 - GFF6223 0.75 +0.7 5,328 - GFF6223 0.75 -2.4 5,785 + -0.6 5,786 - -2.2 6,133 + GFF6224 0.35 -3.4 6,133 + GFF6224 0.35 -0.7 6,133 + GFF6224 0.35 -0.3 6,133 + GFF6224 0.35 -2.2 6,134 - GFF6224 0.36 -1.6 6,134 - GFF6224 0.36 +0.2 6,134 - GFF6224 0.36 -0.6 6,644 - GFF6224 0.74 -1.6 6,644 - GFF6224 0.74 +0.8 6,872 - +2.7 6,872 - +0.3 7,072 - +1.0 7,079 - -2.8 7,112 + +1.1 7,112 + -0.4 7,113 - -0.5 7,163 + -1.0 7,163 + +0.4 7,163 + +2.7 7,163 + +0.4 7,164 - +0.6 7,164 - -0.6 7,165 + +1.7 7,250 + GFF6225 0.12 +0.5 7,250 + GFF6225 0.12 +0.0 7,298 + GFF6225 0.16 -3.0 7,305 - GFF6225 0.17 -2.5 7,916 + GFF6225 0.74 -1.9 7,916 + GFF6225 0.74 -1.0 7,916 + GFF6225 0.74 -0.8 7,916 + GFF6225 0.74 -0.8 7,917 - GFF6225 0.75 -3.1 7,917 - GFF6225 0.75 -1.3 7,917 - GFF6225 0.75 -1.7 7,931 + GFF6225 0.76 -0.3 7,931 + GFF6225 0.76 +0.4 7,932 - GFF6225 0.76 -2.9 7,932 - GFF6225 0.76 +1.2
Or see this region's nucleotide sequence