Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6191 and GFF6192 are separated by 24 nucleotides GFF6192 and GFF6193 are separated by 4 nucleotides
GFF6191 - Aldehyde dehydrogenase (EC 1.2.1.3), at 96,686 to 98,134
GFF6191
GFF6192 - Amidase family protein Atu4441, at 98,159 to 99,562
GFF6192
GFF6193 - ABC transporter, substrate-binding protein (cluster 5, nickel/peptides/opines), at 99,567 to 101,060
GFF6193
Position (kb) 98
99
100 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 97.242 kb on + strand, within GFF6191 at 97.675 kb on - strand, within GFF6191 at 97.675 kb on - strand, within GFF6191 at 97.735 kb on - strand, within GFF6191 at 97.735 kb on - strand, within GFF6191 at 97.746 kb on + strand, within GFF6191 at 97.746 kb on + strand, within GFF6191 at 97.746 kb on + strand, within GFF6191 at 97.747 kb on - strand, within GFF6191 at 97.789 kb on - strand, within GFF6191 at 97.789 kb on - strand, within GFF6191 at 97.789 kb on - strand, within GFF6191 at 97.791 kb on + strand, within GFF6191 at 97.791 kb on + strand, within GFF6191 at 97.791 kb on + strand, within GFF6191 at 97.791 kb on + strand, within GFF6191 at 97.791 kb on + strand, within GFF6191 at 97.791 kb on + strand, within GFF6191 at 97.792 kb on - strand, within GFF6191 at 97.792 kb on - strand, within GFF6191 at 97.792 kb on - strand, within GFF6191 at 97.792 kb on - strand, within GFF6191 at 97.792 kb on - strand, within GFF6191 at 97.792 kb on - strand, within GFF6191 at 97.792 kb on - strand, within GFF6191 at 97.792 kb on - strand, within GFF6191 at 97.792 kb on - strand, within GFF6191 at 97.792 kb on - strand, within GFF6191 at 97.792 kb on - strand, within GFF6191 at 97.792 kb on - strand, within GFF6191 at 97.801 kb on - strand, within GFF6191 at 97.801 kb on - strand, within GFF6191 at 98.289 kb on + strand at 98.331 kb on + strand, within GFF6192 at 98.331 kb on + strand, within GFF6192 at 98.332 kb on - strand, within GFF6192 at 98.332 kb on - strand, within GFF6192 at 98.332 kb on - strand, within GFF6192 at 98.332 kb on - strand, within GFF6192 at 98.332 kb on - strand, within GFF6192 at 98.493 kb on + strand, within GFF6192 at 98.553 kb on + strand, within GFF6192 at 98.554 kb on - strand, within GFF6192 at 98.554 kb on - strand, within GFF6192 at 98.554 kb on - strand, within GFF6192 at 98.554 kb on - strand, within GFF6192 at 98.943 kb on + strand, within GFF6192 at 98.944 kb on - strand, within GFF6192 at 98.944 kb on - strand, within GFF6192 at 98.944 kb on - strand, within GFF6192 at 98.989 kb on - strand, within GFF6192 at 98.989 kb on - strand, within GFF6192 at 98.989 kb on - strand, within GFF6192 at 99.246 kb on + strand, within GFF6192 at 99.246 kb on + strand, within GFF6192 at 99.267 kb on + strand, within GFF6192 at 99.268 kb on - strand, within GFF6192 at 99.268 kb on - strand, within GFF6192 at 99.511 kb on - strand at 99.543 kb on + strand at 99.802 kb on + strand, within GFF6193 at 99.803 kb on - strand, within GFF6193 at 99.806 kb on - strand, within GFF6193 at 99.820 kb on + strand, within GFF6193 at 99.820 kb on + strand, within GFF6193 at 99.988 kb on + strand, within GFF6193 at 99.988 kb on + strand, within GFF6193 at 99.989 kb on - strand, within GFF6193 at 99.989 kb on - strand, within GFF6193 at 99.989 kb on - strand, within GFF6193 at 99.989 kb on - strand, within GFF6193
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 97,242 + GFF6191 0.38 -2.0 97,675 - GFF6191 0.68 -1.0 97,675 - GFF6191 0.68 -1.4 97,735 - GFF6191 0.72 -0.4 97,735 - GFF6191 0.72 -2.0 97,746 + GFF6191 0.73 -1.5 97,746 + GFF6191 0.73 -0.6 97,746 + GFF6191 0.73 -1.7 97,747 - GFF6191 0.73 -2.7 97,789 - GFF6191 0.76 -2.2 97,789 - GFF6191 0.76 -0.7 97,789 - GFF6191 0.76 -1.0 97,791 + GFF6191 0.76 -3.6 97,791 + GFF6191 0.76 -1.2 97,791 + GFF6191 0.76 -3.4 97,791 + GFF6191 0.76 -2.0 97,791 + GFF6191 0.76 +2.1 97,791 + GFF6191 0.76 -1.4 97,792 - GFF6191 0.76 +0.6 97,792 - GFF6191 0.76 +0.0 97,792 - GFF6191 0.76 -1.9 97,792 - GFF6191 0.76 -3.7 97,792 - GFF6191 0.76 -3.6 97,792 - GFF6191 0.76 -2.6 97,792 - GFF6191 0.76 -2.2 97,792 - GFF6191 0.76 -1.6 97,792 - GFF6191 0.76 -2.4 97,792 - GFF6191 0.76 -0.9 97,792 - GFF6191 0.76 -2.2 97,792 - GFF6191 0.76 -1.4 97,801 - GFF6191 0.77 -0.8 97,801 - GFF6191 0.77 -1.8 98,289 + -3.1 98,331 + GFF6192 0.12 +1.3 98,331 + GFF6192 0.12 -1.7 98,332 - GFF6192 0.12 -2.3 98,332 - GFF6192 0.12 -1.9 98,332 - GFF6192 0.12 -1.0 98,332 - GFF6192 0.12 +0.6 98,332 - GFF6192 0.12 -2.8 98,493 + GFF6192 0.24 -0.7 98,553 + GFF6192 0.28 -0.4 98,554 - GFF6192 0.28 -2.3 98,554 - GFF6192 0.28 -0.0 98,554 - GFF6192 0.28 +2.3 98,554 - GFF6192 0.28 -1.0 98,943 + GFF6192 0.56 -3.0 98,944 - GFF6192 0.56 -2.9 98,944 - GFF6192 0.56 -1.4 98,944 - GFF6192 0.56 -3.4 98,989 - GFF6192 0.59 -3.4 98,989 - GFF6192 0.59 -1.1 98,989 - GFF6192 0.59 -2.6 99,246 + GFF6192 0.77 -2.1 99,246 + GFF6192 0.77 -2.7 99,267 + GFF6192 0.79 -2.1 99,268 - GFF6192 0.79 -1.4 99,268 - GFF6192 0.79 -1.4 99,511 - -3.6 99,543 + -2.2 99,802 + GFF6193 0.16 -1.2 99,803 - GFF6193 0.16 -2.6 99,806 - GFF6193 0.16 -0.0 99,820 + GFF6193 0.17 +1.9 99,820 + GFF6193 0.17 -1.1 99,988 + GFF6193 0.28 -0.8 99,988 + GFF6193 0.28 -3.9 99,989 - GFF6193 0.28 -1.1 99,989 - GFF6193 0.28 +0.0 99,989 - GFF6193 0.28 -0.6 99,989 - GFF6193 0.28 -3.1
Or see this region's nucleotide sequence