Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6144 and GFF6145 are separated by 155 nucleotides GFF6145 and GFF6146 are separated by 1 nucleotides GFF6146 and GFF6147 are separated by 23 nucleotides
GFF6144 - 2-aminoethylphosphonate ABC transporter substrate-binding protein, at 48,335 to 49,375
GFF6144
GFF6145 - 2-aminoethylphosphonate utilization transcriptional regulator, GntR family, at 49,531 to 50,259
GFF6145
GFF6146 - Phosphonoacetate hydrolase (EC 3.11.1.2), at 50,261 to 51,487
GFF6146
GFF6147 - Phosphonoacetaldehyde dehydrogenase (NAD+), at 51,511 to 52,959
GFF6147
Position (kb) 50
51
52 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 49.266 kb on + strand, within GFF6144 at 49.266 kb on + strand, within GFF6144 at 49.267 kb on - strand, within GFF6144 at 49.524 kb on - strand at 49.524 kb on - strand at 49.524 kb on - strand at 49.804 kb on + strand, within GFF6145 at 49.805 kb on - strand, within GFF6145 at 49.939 kb on + strand, within GFF6145 at 49.939 kb on + strand, within GFF6145 at 49.940 kb on - strand, within GFF6145 at 50.011 kb on + strand, within GFF6145 at 50.011 kb on + strand, within GFF6145 at 50.012 kb on - strand, within GFF6145 at 50.012 kb on - strand, within GFF6145 at 50.391 kb on - strand, within GFF6146 at 50.519 kb on + strand, within GFF6146 at 50.519 kb on + strand, within GFF6146 at 50.571 kb on - strand, within GFF6146 at 50.777 kb on + strand, within GFF6146 at 50.777 kb on + strand, within GFF6146 at 50.853 kb on - strand, within GFF6146 at 50.853 kb on - strand, within GFF6146 at 51.035 kb on + strand, within GFF6146 at 51.035 kb on + strand, within GFF6146 at 51.035 kb on + strand, within GFF6146 at 51.063 kb on - strand, within GFF6146 at 51.149 kb on + strand, within GFF6146 at 51.150 kb on - strand, within GFF6146 at 51.150 kb on - strand, within GFF6146 at 51.663 kb on - strand, within GFF6147 at 51.721 kb on + strand, within GFF6147 at 52.108 kb on + strand, within GFF6147 at 52.108 kb on + strand, within GFF6147 at 52.109 kb on - strand, within GFF6147
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 49,266 + GFF6144 0.89 +1.8 49,266 + GFF6144 0.89 +0.6 49,267 - GFF6144 0.90 -1.6 49,524 - -3.0 49,524 - -1.2 49,524 - +0.8 49,804 + GFF6145 0.37 +0.3 49,805 - GFF6145 0.38 -4.0 49,939 + GFF6145 0.56 -2.3 49,939 + GFF6145 0.56 -0.4 49,940 - GFF6145 0.56 -3.4 50,011 + GFF6145 0.66 +0.4 50,011 + GFF6145 0.66 -1.6 50,012 - GFF6145 0.66 -1.2 50,012 - GFF6145 0.66 -2.5 50,391 - GFF6146 0.11 -1.8 50,519 + GFF6146 0.21 -1.6 50,519 + GFF6146 0.21 +0.3 50,571 - GFF6146 0.25 +1.6 50,777 + GFF6146 0.42 +1.1 50,777 + GFF6146 0.42 -1.6 50,853 - GFF6146 0.48 +0.1 50,853 - GFF6146 0.48 +1.4 51,035 + GFF6146 0.63 +1.3 51,035 + GFF6146 0.63 +1.6 51,035 + GFF6146 0.63 +1.6 51,063 - GFF6146 0.65 -0.1 51,149 + GFF6146 0.72 -0.2 51,150 - GFF6146 0.72 -0.6 51,150 - GFF6146 0.72 -3.6 51,663 - GFF6147 0.10 -1.4 51,721 + GFF6147 0.14 -0.5 52,108 + GFF6147 0.41 -2.4 52,108 + GFF6147 0.41 +0.5 52,109 - GFF6147 0.41 +1.0
Or see this region's nucleotide sequence