Strain Fitness in Variovorax sp. SCN45 around GFF5935

Experiment: Community=arabino-guar; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=arabino-guar; Passage=4
151,313	+		GFF5934	0.73	+0.5
151,433	+		GFF5934	0.78	-0.1
151,433	+		GFF5934	0.78	+0.9
151,433	+		GFF5934	0.78	-2.1
151,433	+		GFF5934	0.78	-2.1
151,434	-		GFF5934	0.78	+0.4
152,242	+				+1.8
152,578	+		GFF5935	0.23	+0.5
152,578	+		GFF5935	0.23	+0.4
152,578	+		GFF5935	0.23	+0.2
152,579	-		GFF5935	0.23	-1.5
152,770	+		GFF5935	0.31	-4.5
152,987	-		GFF5935	0.40	+0.9
153,433	+		GFF5935	0.59	-1.1
153,434	-		GFF5935	0.59	-1.4
153,886	+		GFF5935	0.78	-4.7
153,886	+		GFF5935	0.78	-1.5
153,886	+		GFF5935	0.78	+2.5
153,886	+		GFF5935	0.78	-1.9
153,887	-		GFF5935	0.78	-2.1
153,887	-		GFF5935	0.78	-1.6
154,132	+		GFF5935	0.89	+0.7
154,133	-		GFF5935	0.89	-1.8
154,629	-				+0.4
154,728	-		GFF5936	0.11	+1.7
155,156	+		GFF5936	0.27	-0.8