Strain Fitness in Variovorax sp. SCN45 around GFF5898

Experiment: Community=arabino-guar; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=arabino-guar; Passage=4
115,134	-		GFF5896	0.64	-2.5
115,145	+		GFF5896	0.65	-1.2
115,146	-		GFF5896	0.65	+0.9
115,146	-		GFF5896	0.65	-3.4
115,274	+		GFF5896	0.74	-0.9
115,749	+		GFF5897	0.29	-0.4
115,749	+		GFF5897	0.29	+0.5
115,749	+		GFF5897	0.29	-2.5
115,749	+		GFF5897	0.29	-1.9
115,749	+		GFF5897	0.29	+1.0
115,749	+		GFF5897	0.29	-1.4
115,749	+		GFF5897	0.29	-1.8
115,749	+		GFF5897	0.29	-2.2
115,750	-		GFF5897	0.29	-1.5
115,750	-		GFF5897	0.29	-2.6
115,750	-		GFF5897	0.29	-0.2
115,750	-		GFF5897	0.29	+0.6
115,811	+		GFF5897	0.69	+1.1
115,811	+		GFF5897	0.69	+0.2
115,811	+		GFF5897	0.69	-0.6
115,811	+		GFF5897	0.69	+0.8
115,811	+		GFF5897	0.69	+0.0
115,811	+		GFF5897	0.69	+0.7
115,811	+		GFF5897	0.69	-1.6
115,811	+		GFF5897	0.69	+2.8
115,811	+		GFF5897	0.69	+0.1
115,811	+		GFF5897	0.69	+0.2
115,811	+		GFF5897	0.69	-2.1
115,811	+		GFF5897	0.69	+0.8
115,811	+		GFF5897	0.69	+1.2
115,811	+		GFF5897	0.69	-1.7
115,811	+		GFF5897	0.69	-2.3
115,811	+		GFF5897	0.69	-1.9
115,811	+		GFF5897	0.69	+1.0
115,812	-		GFF5897	0.70	-1.6
115,812	-		GFF5897	0.70	+3.9
115,812	-		GFF5897	0.70	-0.2
115,812	-		GFF5897	0.70	-2.1
115,812	-		GFF5897	0.70	+0.9
115,812	-		GFF5897	0.70	+1.0
115,812	-		GFF5897	0.70	-1.7
115,812	-		GFF5897	0.70	-0.3
115,812	-		GFF5897	0.70	+0.0
115,812	-		GFF5897	0.70	-0.4
115,812	-		GFF5897	0.70	+1.9
115,812	-		GFF5897	0.70	-2.4
115,812	-		GFF5897	0.70	+0.4
115,812	-		GFF5897	0.70	-1.4
115,812	-		GFF5897	0.70	+1.6
115,812	-		GFF5897	0.70	-0.3
115,817	+		GFF5897	0.73	-1.7
115,817	+		GFF5897	0.73	-0.3
115,817	+		GFF5897	0.73	+0.3
115,818	-		GFF5897	0.74	+0.4
115,892	-				-0.1
115,965	+				-2.0
115,966	-				+1.7
116,191	+		GFF5898	0.28	-1.5
116,191	+		GFF5898	0.28	+1.9
116,191	+		GFF5898	0.28	+1.3
116,192	-		GFF5898	0.29	+0.5
116,212	+		GFF5898	0.32	-2.5
116,227	+		GFF5898	0.34	-0.6
116,227	+		GFF5898	0.34	+0.9
116,227	+		GFF5898	0.34	-1.5
116,227	+		GFF5898	0.34	+1.0
116,227	+		GFF5898	0.34	-0.6
116,227	+		GFF5898	0.34	-0.5
116,228	-		GFF5898	0.34	-1.2
116,228	-		GFF5898	0.34	-0.5
116,228	-		GFF5898	0.34	-1.6
116,228	-		GFF5898	0.34	+0.1
116,228	-		GFF5898	0.34	+0.8
116,228	-		GFF5898	0.34	+0.9
116,621	-				+0.5
116,713	+		GFF5899	0.11	-1.1
116,713	+		GFF5899	0.11	-0.7
116,713	+		GFF5899	0.11	-0.1
116,713	+		GFF5899	0.11	-0.4
116,713	+		GFF5899	0.11	-2.1
116,714	-		GFF5899	0.11	+0.5
116,714	-		GFF5899	0.11	-0.5
116,719	+		GFF5899	0.12	-0.4
117,016	+		GFF5899	0.54	-0.2
117,016	+		GFF5899	0.54	-2.7
117,016	+		GFF5899	0.54	+1.4
117,016	+		GFF5899	0.54	-2.1
117,016	+		GFF5899	0.54	-0.7
117,016	+		GFF5899	0.54	-2.1
117,017	-		GFF5899	0.54	-1.5
117,049	+		GFF5899	0.59	+0.0
117,049	+		GFF5899	0.59	-3.3
117,049	+		GFF5899	0.59	+1.0
117,049	+		GFF5899	0.59	-0.1
117,050	-		GFF5899	0.59	-2.2
117,050	-		GFF5899	0.59	-0.8
117,050	-		GFF5899	0.59	-0.4
117,050	-		GFF5899	0.59	-0.2
117,061	+		GFF5899	0.60	-0.8
117,062	-		GFF5899	0.61	+2.1
117,062	-		GFF5899	0.61	+1.3
117,062	-		GFF5899	0.61	-0.2
117,062	-		GFF5899	0.61	-1.3
117,385	+		GFF5900	0.15	+0.7
117,385	+		GFF5900	0.15	+0.9
117,386	-		GFF5900	0.15	+0.6
117,386	-		GFF5900	0.15	+1.2
117,386	-		GFF5900	0.15	-1.9
117,386	-		GFF5900	0.15	-0.6
117,486	+		GFF5900	0.75	+1.3
117,486	+		GFF5900	0.75	+1.4
117,486	+		GFF5900	0.75	+1.3
117,486	+		GFF5900	0.75	-0.4
117,486	+		GFF5900	0.75	-1.1
117,487	-		GFF5900	0.76	-3.3
117,487	-		GFF5900	0.76	-1.3
117,487	-		GFF5900	0.76	-0.9
117,487	-		GFF5900	0.76	+1.3
117,577	+				+2.3
117,583	+				-0.1
117,584	-				+0.4
117,584	-				+0.1
117,587	+				+1.8
117,587	+				-0.1
117,587	+				+2.1
117,587	+				-1.6
117,588	-				-2.1
117,588	-				+1.2
117,588	-				-1.1
117,588	-				-1.5
117,588	-				-0.6
117,588	-				-2.5
117,590	+				+0.4
117,591	-				-0.1
117,593	+				-2.6
117,593	+				-1.0
117,594	-				-1.9
117,594	-				-3.0
117,594	-				-1.1
117,596	+				-1.0
117,596	+				+0.7
117,596	+				+0.9
117,596	+				-0.3
117,596	+				-2.1
117,596	+				-1.0
117,597	-				+1.8
117,597	-				-0.9
117,597	-				+1.3
117,613	+				+0.8
117,614	-				-2.9
117,617	+				-0.4
117,617	+				-1.1
117,617	+				+2.0
117,617	+				-1.5
117,617	+				+0.3
117,617	+				-0.9
117,617	+				-2.7
117,618	-				-1.4
117,618	-				+0.1
117,618	-				-2.6
117,618	-				+0.1
117,618	-				-0.3
117,618	-				+0.6
117,618	-				-3.1
117,618	-				-0.9
117,618	-				-1.9