Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5891 and GFF5892 are separated by 21 nucleotides GFF5892 and GFF5893 are separated by 17 nucleotides
GFF5891 - Anthranilate phosphoribosyltransferase (EC 2.4.2.18), at 110,408 to 111,430
GFF5891
GFF5892 - Lysine exporter protein LysE/YggA, at 111,452 to 112,111
GFF5892
GFF5893 - Low-specificity L-threonine aldolase (EC 4.1.2.48), at 112,129 to 113,187
GFF5893
Position (kb) 111
112
113 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 111.864 kb on + strand, within GFF5892 at 111.864 kb on + strand, within GFF5892 at 111.879 kb on + strand, within GFF5892 at 111.879 kb on + strand, within GFF5892 at 111.880 kb on - strand, within GFF5892 at 111.880 kb on - strand, within GFF5892 at 111.880 kb on - strand, within GFF5892 at 111.880 kb on - strand, within GFF5892 at 111.880 kb on - strand, within GFF5892 at 111.880 kb on - strand, within GFF5892 at 111.880 kb on - strand, within GFF5892 at 112.032 kb on + strand, within GFF5892 at 112.032 kb on + strand, within GFF5892 at 112.032 kb on + strand, within GFF5892 at 112.032 kb on + strand, within GFF5892 at 112.033 kb on - strand, within GFF5892 at 112.217 kb on + strand at 112.218 kb on - strand at 112.727 kb on + strand, within GFF5893 at 112.728 kb on - strand, within GFF5893 at 112.728 kb on - strand, within GFF5893 at 112.943 kb on + strand, within GFF5893 at 112.943 kb on + strand, within GFF5893 at 112.943 kb on + strand, within GFF5893 at 112.944 kb on - strand, within GFF5893 at 112.944 kb on - strand, within GFF5893 at 112.944 kb on - strand, within GFF5893 at 112.944 kb on - strand, within GFF5893 at 112.944 kb on - strand, within GFF5893
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 111,864 + GFF5892 0.62 -0.0 111,864 + GFF5892 0.62 -1.4 111,879 + GFF5892 0.65 -0.2 111,879 + GFF5892 0.65 -2.3 111,880 - GFF5892 0.65 -0.5 111,880 - GFF5892 0.65 -1.4 111,880 - GFF5892 0.65 +0.4 111,880 - GFF5892 0.65 -3.2 111,880 - GFF5892 0.65 -2.8 111,880 - GFF5892 0.65 -2.1 111,880 - GFF5892 0.65 -2.4 112,032 + GFF5892 0.88 +1.9 112,032 + GFF5892 0.88 +0.4 112,032 + GFF5892 0.88 +0.7 112,032 + GFF5892 0.88 -2.8 112,033 - GFF5892 0.88 -2.0 112,217 + +0.4 112,218 - -2.1 112,727 + GFF5893 0.56 +0.4 112,728 - GFF5893 0.57 +0.4 112,728 - GFF5893 0.57 -0.1 112,943 + GFF5893 0.77 -1.4 112,943 + GFF5893 0.77 +0.9 112,943 + GFF5893 0.77 -2.2 112,944 - GFF5893 0.77 -2.8 112,944 - GFF5893 0.77 -0.4 112,944 - GFF5893 0.77 -1.6 112,944 - GFF5893 0.77 +0.2 112,944 - GFF5893 0.77 +0.6
Or see this region's nucleotide sequence