Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5800 and GFF5801 overlap by 4 nucleotides GFF5801 and GFF5802 overlap by 4 nucleotides
GFF5800 - Urea ABC transporter, permease protein UrtB, at 175,096 to 176,643
GFF5800
GFF5801 - Urea ABC transporter, permease protein UrtC, at 176,640 to 177,857
GFF5801
GFF5802 - Urea ABC transporter, ATPase protein UrtD, at 177,854 to 178,732
GFF5802
Position (kb) 176
177
178 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 175.820 kb on - strand, within GFF5800 at 175.820 kb on - strand, within GFF5800 at 175.877 kb on - strand, within GFF5800 at 175.877 kb on - strand, within GFF5800 at 175.885 kb on + strand, within GFF5800 at 175.886 kb on - strand, within GFF5800 at 175.913 kb on - strand, within GFF5800 at 175.913 kb on - strand, within GFF5800 at 175.913 kb on - strand, within GFF5800 at 175.939 kb on + strand, within GFF5800 at 175.939 kb on + strand, within GFF5800 at 175.939 kb on + strand, within GFF5800 at 175.939 kb on + strand, within GFF5800 at 175.940 kb on - strand, within GFF5800 at 176.335 kb on + strand, within GFF5800 at 176.335 kb on + strand, within GFF5800 at 176.336 kb on - strand, within GFF5800 at 176.336 kb on - strand, within GFF5800 at 176.336 kb on - strand, within GFF5800 at 176.425 kb on + strand, within GFF5800 at 176.425 kb on + strand, within GFF5800 at 176.425 kb on + strand, within GFF5800 at 176.425 kb on + strand, within GFF5800 at 176.426 kb on - strand, within GFF5800 at 176.426 kb on - strand, within GFF5800 at 176.488 kb on + strand, within GFF5800 at 176.489 kb on - strand at 176.788 kb on - strand, within GFF5801 at 176.788 kb on - strand, within GFF5801 at 176.820 kb on + strand, within GFF5801 at 176.820 kb on + strand, within GFF5801 at 176.910 kb on + strand, within GFF5801 at 176.926 kb on - strand, within GFF5801 at 176.926 kb on - strand, within GFF5801 at 176.926 kb on - strand, within GFF5801 at 176.926 kb on - strand, within GFF5801 at 176.958 kb on + strand, within GFF5801 at 176.959 kb on - strand, within GFF5801 at 176.959 kb on - strand, within GFF5801 at 177.053 kb on - strand, within GFF5801 at 177.129 kb on + strand, within GFF5801 at 177.130 kb on - strand, within GFF5801 at 177.418 kb on - strand, within GFF5801 at 177.474 kb on + strand, within GFF5801 at 177.474 kb on + strand, within GFF5801 at 177.651 kb on + strand, within GFF5801 at 178.010 kb on + strand, within GFF5802 at 178.011 kb on - strand, within GFF5802 at 178.845 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 175,820 - GFF5800 0.47 -0.1 175,820 - GFF5800 0.47 -0.1 175,877 - GFF5800 0.50 +1.0 175,877 - GFF5800 0.50 +2.6 175,885 + GFF5800 0.51 +1.3 175,886 - GFF5800 0.51 -0.8 175,913 - GFF5800 0.53 -2.6 175,913 - GFF5800 0.53 -3.5 175,913 - GFF5800 0.53 +1.4 175,939 + GFF5800 0.54 -2.1 175,939 + GFF5800 0.54 -0.2 175,939 + GFF5800 0.54 +2.9 175,939 + GFF5800 0.54 +1.5 175,940 - GFF5800 0.55 -2.4 176,335 + GFF5800 0.80 -2.1 176,335 + GFF5800 0.80 -2.0 176,336 - GFF5800 0.80 +0.6 176,336 - GFF5800 0.80 -0.8 176,336 - GFF5800 0.80 -0.0 176,425 + GFF5800 0.86 -1.2 176,425 + GFF5800 0.86 -3.1 176,425 + GFF5800 0.86 -0.6 176,425 + GFF5800 0.86 -2.1 176,426 - GFF5800 0.86 +0.6 176,426 - GFF5800 0.86 +2.1 176,488 + GFF5800 0.90 -0.8 176,489 - +1.4 176,788 - GFF5801 0.12 +0.3 176,788 - GFF5801 0.12 -0.2 176,820 + GFF5801 0.15 -0.4 176,820 + GFF5801 0.15 +0.7 176,910 + GFF5801 0.22 +2.4 176,926 - GFF5801 0.23 -1.3 176,926 - GFF5801 0.23 -0.5 176,926 - GFF5801 0.23 -0.2 176,926 - GFF5801 0.23 +0.6 176,958 + GFF5801 0.26 +0.8 176,959 - GFF5801 0.26 -0.5 176,959 - GFF5801 0.26 -0.5 177,053 - GFF5801 0.34 +1.4 177,129 + GFF5801 0.40 -2.4 177,130 - GFF5801 0.40 -2.2 177,418 - GFF5801 0.64 -0.0 177,474 + GFF5801 0.68 +0.1 177,474 + GFF5801 0.68 -1.6 177,651 + GFF5801 0.83 -2.4 178,010 + GFF5802 0.18 -1.4 178,011 - GFF5802 0.18 +0.1 178,845 + -1.2
Or see this region's nucleotide sequence