Strain Fitness in Variovorax sp. SCN45 around GFF5461

Experiment: Community=arabino-guar; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=arabino-guar; Passage=4
91,075	+				-0.2
91,075	+				-1.7
91,075	+				+0.2
91,075	+				+0.1
91,075	+				-0.0
91,075	+				+0.2
91,075	+				-0.2
91,075	+				-2.0
91,075	+				-2.5
91,075	+				-1.3
91,076	-				-0.8
91,076	-				+1.4
91,076	-				+1.5
91,076	-				-0.3
91,150	+				-0.3
91,151	-				+0.3
91,313	+		GFF5460	0.34	-0.3
91,327	+		GFF5460	0.36	-0.7
91,328	-		GFF5460	0.36	-0.2
91,447	+		GFF5460	0.54	-0.0
91,447	+		GFF5460	0.54	+2.4
91,447	+		GFF5460	0.54	+0.4
91,448	-		GFF5460	0.54	+2.1
91,753	+				-1.0
91,753	+				-1.5
91,754	-				+2.6
91,754	-				+0.6
91,864	+		GFF5461	0.12	+0.6
91,864	+		GFF5461	0.12	-0.4
91,864	+		GFF5461	0.12	+1.1
91,864	+		GFF5461	0.12	+1.6
91,865	-		GFF5461	0.12	-0.0
91,865	-		GFF5461	0.12	+0.9
91,865	-		GFF5461	0.12	-1.1
91,876	+		GFF5461	0.14	+1.4
92,128	+		GFF5461	0.44	-1.3
92,128	+		GFF5461	0.44	+0.2
92,128	+		GFF5461	0.44	-2.0
92,128	+		GFF5461	0.44	+1.5
92,129	-		GFF5461	0.44	-1.2
92,129	-		GFF5461	0.44	-2.2
92,129	-		GFF5461	0.44	-0.2
92,183	+		GFF5461	0.51	-1.3
92,184	-		GFF5461	0.51	+0.7
92,184	-		GFF5461	0.51	+0.5
92,302	+		GFF5461	0.66	-0.3
92,302	+		GFF5461	0.66	+0.0
92,302	+		GFF5461	0.66	-0.5
92,303	-		GFF5461	0.66	-0.2
92,303	-		GFF5461	0.66	+1.9
92,303	-		GFF5461	0.66	-1.9
92,339	-		GFF5461	0.70	-1.0
92,350	+		GFF5461	0.71	+0.2
92,350	+		GFF5461	0.71	-1.0
92,351	-		GFF5461	0.72	-3.0
92,351	-		GFF5461	0.72	-2.3
92,431	+		GFF5461	0.81	-0.2
92,431	+		GFF5461	0.81	+0.7
92,431	+		GFF5461	0.81	-0.1
92,431	+		GFF5461	0.81	-0.1
92,431	+		GFF5461	0.81	+0.1
92,431	+		GFF5461	0.81	-0.7
92,431	+		GFF5461	0.81	-0.2
92,431	+		GFF5461	0.81	-0.3
92,432	-		GFF5461	0.81	-0.9
92,432	-		GFF5461	0.81	+0.1
92,432	-		GFF5461	0.81	+0.7
92,432	-		GFF5461	0.81	+0.5
92,432	-		GFF5461	0.81	+0.7
92,432	-		GFF5461	0.81	-1.7
92,432	-		GFF5461	0.81	+0.9
92,437	+		GFF5461	0.82	+3.5
92,437	+		GFF5461	0.82	-0.9
92,437	+		GFF5461	0.82	-0.7
92,437	+		GFF5461	0.82	+1.8
92,437	+		GFF5461	0.82	+0.5
92,437	+		GFF5461	0.82	+0.4
92,438	-		GFF5461	0.82	+0.2
92,438	-		GFF5461	0.82	-2.3
92,503	+				-2.1
92,503	+				+1.2
92,737	+		GFF5462	0.13	-2.0
92,737	+		GFF5462	0.13	+1.1
92,737	+		GFF5462	0.13	+1.0
92,738	-		GFF5462	0.13	-2.9
92,766	+		GFF5462	0.16	-1.7
92,766	+		GFF5462	0.16	-4.0
92,766	+		GFF5462	0.16	-1.1
92,766	+		GFF5462	0.16	-0.8
92,766	+		GFF5462	0.16	+1.4
92,766	+		GFF5462	0.16	-1.7
92,766	+		GFF5462	0.16	-0.5
92,766	+		GFF5462	0.16	-2.0
92,766	+		GFF5462	0.16	-1.2
92,767	-		GFF5462	0.16	-1.1
92,767	-		GFF5462	0.16	-0.2
92,767	-		GFF5462	0.16	-0.7
92,767	-		GFF5462	0.16	-1.3
93,118	-		GFF5462	0.45	-0.2
93,397	-		GFF5462	0.68	-1.1
93,397	-		GFF5462	0.68	+0.6
93,397	-		GFF5462	0.68	+0.9
93,513	+		GFF5462	0.78	-1.6
93,513	+		GFF5462	0.78	+0.5
93,513	+		GFF5462	0.78	-0.9
93,514	-		GFF5462	0.78	-0.6
93,514	-		GFF5462	0.78	+0.5
93,514	-		GFF5462	0.78	-1.0
93,514	-		GFF5462	0.78	+0.7
93,514	-		GFF5462	0.78	+0.5
93,514	-		GFF5462	0.78	+1.0
93,514	-		GFF5462	0.78	+0.0
93,514	-		GFF5462	0.78	-2.2
93,514	-		GFF5462	0.78	-1.6
93,514	-		GFF5462	0.78	-0.4
93,519	+		GFF5462	0.78	-1.8
93,528	+		GFF5462	0.79	-0.2
93,528	+		GFF5462	0.79	-1.2
93,528	+		GFF5462	0.79	+0.4
93,528	+		GFF5462	0.79	-0.3
93,528	+		GFF5462	0.79	+0.1
93,528	+		GFF5462	0.79	+0.5
93,528	+		GFF5462	0.79	+0.8
93,528	+		GFF5462	0.79	-1.5
93,528	+		GFF5462	0.79	-0.5
93,529	-		GFF5462	0.79	+1.7