Strain Fitness in Variovorax sp. SCN45 around GFF5370

Experiment: Community=arabino-guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5368 and GFF5369 are separated by 124 nucleotidesGFF5369 and GFF5370 are separated by 59 nucleotidesGFF5370 and GFF5371 are separated by 158 nucleotides GFF5368 - 4-hydroxythreonine-4-phosphate dehydrogenase (EC 1.1.1.262), at 241,278 to 242,321 GFF5368 GFF5369 - Large-conductance mechanosensitive channel, at 242,446 to 242,874 GFF5369 GFF5370 - TPR domain protein, putative component of TonB system, at 242,934 to 245,423 GFF5370 GFF5371 - no description, at 245,582 to 246,469 GFF5371 Position (kb) 242 243 244 245 246Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 242.447 kb on + strandat 242.448 kb on - strandat 242.482 kb on + strandat 242.702 kb on + strand, within GFF5369at 242.703 kb on - strand, within GFF5369at 242.703 kb on - strand, within GFF5369at 242.703 kb on - strand, within GFF5369at 242.703 kb on - strand, within GFF5369at 242.703 kb on - strand, within GFF5369at 242.703 kb on - strand, within GFF5369at 242.919 kb on + strandat 242.919 kb on + strandat 242.919 kb on + strandat 242.919 kb on + strandat 243.055 kb on + strandat 243.056 kb on - strandat 243.127 kb on + strandat 243.148 kb on + strandat 243.149 kb on - strandat 243.149 kb on - strandat 243.149 kb on - strandat 243.149 kb on - strandat 243.149 kb on - strandat 243.149 kb on - strandat 243.295 kb on + strand, within GFF5370at 243.296 kb on - strand, within GFF5370at 243.296 kb on - strand, within GFF5370at 243.456 kb on + strand, within GFF5370at 243.456 kb on + strand, within GFF5370at 243.456 kb on + strand, within GFF5370at 243.456 kb on + strand, within GFF5370at 243.457 kb on - strand, within GFF5370at 243.457 kb on - strand, within GFF5370at 243.457 kb on - strand, within GFF5370at 243.457 kb on - strand, within GFF5370at 243.457 kb on - strand, within GFF5370at 243.457 kb on - strand, within GFF5370at 243.457 kb on - strand, within GFF5370at 243.661 kb on + strand, within GFF5370at 243.661 kb on + strand, within GFF5370at 243.662 kb on - strand, within GFF5370at 243.662 kb on - strand, within GFF5370at 243.709 kb on + strand, within GFF5370at 243.709 kb on + strand, within GFF5370at 243.709 kb on + strand, within GFF5370at 243.710 kb on - strand, within GFF5370at 243.715 kb on + strand, within GFF5370at 243.715 kb on + strand, within GFF5370at 243.715 kb on + strand, within GFF5370at 243.716 kb on - strand, within GFF5370at 243.716 kb on - strand, within GFF5370at 243.722 kb on + strand, within GFF5370at 243.722 kb on + strand, within GFF5370at 243.722 kb on + strand, within GFF5370at 243.723 kb on - strand, within GFF5370at 243.723 kb on - strand, within GFF5370at 243.723 kb on - strand, within GFF5370at 243.743 kb on - strand, within GFF5370at 243.778 kb on + strand, within GFF5370at 243.778 kb on + strand, within GFF5370at 243.778 kb on + strand, within GFF5370at 243.955 kb on + strand, within GFF5370at 243.955 kb on + strand, within GFF5370at 243.956 kb on - strand, within GFF5370at 243.961 kb on + strand, within GFF5370at 243.961 kb on + strand, within GFF5370at 243.962 kb on - strand, within GFF5370at 244.001 kb on - strand, within GFF5370at 244.001 kb on - strand, within GFF5370at 244.052 kb on - strand, within GFF5370at 244.396 kb on + strand, within GFF5370at 244.397 kb on - strand, within GFF5370at 244.397 kb on - strand, within GFF5370at 244.397 kb on - strand, within GFF5370at 244.561 kb on + strand, within GFF5370at 244.561 kb on + strand, within GFF5370at 244.561 kb on + strand, within GFF5370at 244.561 kb on + strand, within GFF5370at 244.561 kb on + strand, within GFF5370at 244.561 kb on + strand, within GFF5370at 244.562 kb on - strand, within GFF5370at 244.562 kb on - strand, within GFF5370at 244.562 kb on - strand, within GFF5370at 244.562 kb on - strand, within GFF5370at 244.562 kb on - strand, within GFF5370at 244.562 kb on - strand, within GFF5370at 244.562 kb on - strand, within GFF5370at 244.562 kb on - strand, within GFF5370at 244.562 kb on - strand, within GFF5370at 244.562 kb on - strand, within GFF5370at 244.621 kb on + strand, within GFF5370at 244.622 kb on - strand, within GFF5370at 244.756 kb on + strand, within GFF5370at 244.757 kb on - strand, within GFF5370at 244.757 kb on - strand, within GFF5370at 244.757 kb on - strand, within GFF5370at 245.062 kb on + strand, within GFF5370at 245.062 kb on + strand, within GFF5370at 245.062 kb on + strand, within GFF5370at 245.062 kb on + strand, within GFF5370at 245.062 kb on + strand, within GFF5370at 245.063 kb on - strand, within GFF5370at 245.063 kb on - strand, within GFF5370at 245.063 kb on - strand, within GFF5370at 245.063 kb on - strand, within GFF5370at 245.063 kb on - strand, within GFF5370at 245.074 kb on + strand, within GFF5370at 245.075 kb on - strand, within GFF5370at 245.075 kb on - strand, within GFF5370at 245.160 kb on - strand, within GFF5370at 245.167 kb on + strand, within GFF5370at 245.168 kb on - strand, within GFF5370at 245.168 kb on - strand, within GFF5370at 245.168 kb on - strand, within GFF5370at 245.168 kb on - strand, within GFF5370at 245.207 kb on - strandat 245.305 kb on + strandat 245.503 kb on + strandat 245.505 kb on + strandat 245.505 kb on + strandat 245.505 kb on + strandat 245.505 kb on + strandat 245.505 kb on + strandat 245.505 kb on + strandat 245.506 kb on - strandat 245.506 kb on - strandat 245.506 kb on - strandat 245.506 kb on - strandat 245.506 kb on - strandat 245.506 kb on - strandat 245.712 kb on + strand, within GFF5371

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4
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242,447 + -1.0
242,448 - +1.3
242,482 + +1.5
242,702 + GFF5369 0.60 -1.9
242,703 - GFF5369 0.60 +0.2
242,703 - GFF5369 0.60 -0.8
242,703 - GFF5369 0.60 -1.0
242,703 - GFF5369 0.60 +1.7
242,703 - GFF5369 0.60 +0.4
242,703 - GFF5369 0.60 -1.8
242,919 + +1.0
242,919 + +0.6
242,919 + +0.8
242,919 + -0.2
243,055 + -3.4
243,056 - -1.9
243,127 + -2.5
243,148 + -1.0
243,149 - -0.2
243,149 - +0.1
243,149 - -2.4
243,149 - +0.5
243,149 - +0.2
243,149 - +1.3
243,295 + GFF5370 0.14 +0.5
243,296 - GFF5370 0.15 +0.9
243,296 - GFF5370 0.15 -0.5
243,456 + GFF5370 0.21 -1.5
243,456 + GFF5370 0.21 -2.3
243,456 + GFF5370 0.21 +1.0
243,456 + GFF5370 0.21 +0.8
243,457 - GFF5370 0.21 +0.0
243,457 - GFF5370 0.21 -0.3
243,457 - GFF5370 0.21 -0.2
243,457 - GFF5370 0.21 +0.1
243,457 - GFF5370 0.21 -0.1
243,457 - GFF5370 0.21 +0.8
243,457 - GFF5370 0.21 +1.0
243,661 + GFF5370 0.29 +1.8
243,661 + GFF5370 0.29 -1.5
243,662 - GFF5370 0.29 -0.5
243,662 - GFF5370 0.29 +1.2
243,709 + GFF5370 0.31 +0.8
243,709 + GFF5370 0.31 +2.7
243,709 + GFF5370 0.31 -0.7
243,710 - GFF5370 0.31 +1.4
243,715 + GFF5370 0.31 +0.7
243,715 + GFF5370 0.31 -0.4
243,715 + GFF5370 0.31 +1.2
243,716 - GFF5370 0.31 -2.6
243,716 - GFF5370 0.31 -0.3
243,722 + GFF5370 0.32 -1.5
243,722 + GFF5370 0.32 +0.8
243,722 + GFF5370 0.32 -2.9
243,723 - GFF5370 0.32 -2.0
243,723 - GFF5370 0.32 -1.0
243,723 - GFF5370 0.32 +1.0
243,743 - GFF5370 0.32 -1.6
243,778 + GFF5370 0.34 +0.2
243,778 + GFF5370 0.34 -1.0
243,778 + GFF5370 0.34 -1.0
243,955 + GFF5370 0.41 +0.8
243,955 + GFF5370 0.41 +1.5
243,956 - GFF5370 0.41 -2.4
243,961 + GFF5370 0.41 -0.9
243,961 + GFF5370 0.41 -1.5
243,962 - GFF5370 0.41 -1.2
244,001 - GFF5370 0.43 +1.7
244,001 - GFF5370 0.43 +0.0
244,052 - GFF5370 0.45 +2.0
244,396 + GFF5370 0.59 -0.1
244,397 - GFF5370 0.59 -2.0
244,397 - GFF5370 0.59 -1.4
244,397 - GFF5370 0.59 +0.4
244,561 + GFF5370 0.65 -0.5
244,561 + GFF5370 0.65 +0.9
244,561 + GFF5370 0.65 +0.5
244,561 + GFF5370 0.65 +0.8
244,561 + GFF5370 0.65 -0.8
244,561 + GFF5370 0.65 -2.5
244,562 - GFF5370 0.65 +2.6
244,562 - GFF5370 0.65 -0.5
244,562 - GFF5370 0.65 -0.2
244,562 - GFF5370 0.65 +0.6
244,562 - GFF5370 0.65 -1.0
244,562 - GFF5370 0.65 -1.2
244,562 - GFF5370 0.65 +1.4
244,562 - GFF5370 0.65 +0.2
244,562 - GFF5370 0.65 +2.2
244,562 - GFF5370 0.65 +0.8
244,621 + GFF5370 0.68 +1.9
244,622 - GFF5370 0.68 -2.0
244,756 + GFF5370 0.73 -0.2
244,757 - GFF5370 0.73 +0.9
244,757 - GFF5370 0.73 +1.6
244,757 - GFF5370 0.73 -1.0
245,062 + GFF5370 0.85 -1.6
245,062 + GFF5370 0.85 +4.0
245,062 + GFF5370 0.85 -0.8
245,062 + GFF5370 0.85 +0.1
245,062 + GFF5370 0.85 -0.2
245,063 - GFF5370 0.86 +0.3
245,063 - GFF5370 0.86 +0.2
245,063 - GFF5370 0.86 -1.3
245,063 - GFF5370 0.86 -0.3
245,063 - GFF5370 0.86 +1.1
245,074 + GFF5370 0.86 -3.2
245,075 - GFF5370 0.86 +0.6
245,075 - GFF5370 0.86 -2.2
245,160 - GFF5370 0.89 +1.4
245,167 + GFF5370 0.90 -2.8
245,168 - GFF5370 0.90 -0.2
245,168 - GFF5370 0.90 -1.0
245,168 - GFF5370 0.90 -0.2
245,168 - GFF5370 0.90 -0.2
245,207 - -0.1
245,305 + +2.5
245,503 + -2.4
245,505 + -0.1
245,505 + +0.2
245,505 + -1.9
245,505 + +0.2
245,505 + +0.1
245,505 + -2.3
245,506 - +0.8
245,506 - -1.5
245,506 - -0.2
245,506 - -2.5
245,506 - +0.0
245,506 - +0.2
245,712 + GFF5371 0.15 +2.6

Or see this region's nucleotide sequence