Strain Fitness in Variovorax sp. SCN45 around GFF5156

Experiment: Community=arabino-guar; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=arabino-guar; Passage=4
7,306	+		GFF5154	0.74	-3.3
7,307	-		GFF5154	0.74	-2.4
7,307	-		GFF5154	0.74	-1.2
7,486	+		GFF5154	0.85	-0.7
7,487	-		GFF5154	0.85	-0.6
7,487	-		GFF5154	0.85	+1.5
7,487	-		GFF5154	0.85	-0.3
7,645	+				-2.7
7,645	+				-1.0
7,646	-				+0.2
7,646	-				-0.7
7,646	-				+1.0
7,646	-				-1.4
7,646	-				-3.1
7,646	-				+1.4
7,667	-				-1.2
7,694	+				-0.2
7,695	-				-2.5
7,748	+				-0.1
7,749	-				-3.1
7,775	+				-0.8
7,775	+				+1.8
7,775	+				+1.5
7,775	+				-2.6
7,776	-				-1.1
7,786	+				+3.4
7,786	+				+0.8
7,786	+				-2.1
7,787	-				-0.2
7,787	-				-0.7
7,787	-				+0.8
7,787	-				+0.8
7,787	-				-2.2
7,787	-				+1.0
7,787	-				-0.2
8,398	+		GFF5156	0.12	-1.3
8,398	+		GFF5156	0.12	-1.6
8,399	-		GFF5156	0.12	-2.0
8,497	+		GFF5156	0.19	-3.8
8,497	+		GFF5156	0.19	-2.3
8,497	+		GFF5156	0.19	-4.9
8,497	+		GFF5156	0.19	-3.5
8,497	+		GFF5156	0.19	-1.6
8,497	+		GFF5156	0.19	-1.2
8,498	-		GFF5156	0.19	+0.2
8,498	-		GFF5156	0.19	-6.2
8,498	-		GFF5156	0.19	-3.4
8,498	-		GFF5156	0.19	-1.0
8,498	-		GFF5156	0.19	-2.0
8,498	-		GFF5156	0.19	-4.2
8,498	-		GFF5156	0.19	-2.9
8,498	-		GFF5156	0.19	-2.6
8,498	-		GFF5156	0.19	-3.1
8,498	-		GFF5156	0.19	-5.9
8,498	-		GFF5156	0.19	-2.7
8,498	-		GFF5156	0.19	-3.4
8,498	-		GFF5156	0.19	-3.9
8,498	-		GFF5156	0.19	-1.8
8,605	+		GFF5156	0.27	-3.2
8,605	+		GFF5156	0.27	-5.4
8,605	+		GFF5156	0.27	-3.5
8,605	+		GFF5156	0.27	-0.8
8,605	+		GFF5156	0.27	-1.8
8,605	+		GFF5156	0.27	-2.1
8,605	+		GFF5156	0.27	-2.2
8,605	+		GFF5156	0.27	-0.5
8,605	+		GFF5156	0.27	-1.2
8,605	+		GFF5156	0.27	-0.5
8,606	-		GFF5156	0.27	-0.5
8,606	-		GFF5156	0.27	-0.8
8,606	-		GFF5156	0.27	-0.3
8,606	-		GFF5156	0.27	-2.3
8,606	-		GFF5156	0.27	-4.1
8,606	-		GFF5156	0.27	-1.4
8,606	-		GFF5156	0.27	+0.8
8,606	-		GFF5156	0.27	-3.4
8,606	-		GFF5156	0.27	-0.5
8,635	+		GFF5156	0.29	-5.6
8,689	+		GFF5156	0.33	-0.8
8,689	+		GFF5156	0.33	-1.6
8,690	-		GFF5156	0.33	-4.1
8,812	+		GFF5156	0.42	-4.0
8,812	+		GFF5156	0.42	-1.4
8,812	+		GFF5156	0.42	-3.3
8,813	-		GFF5156	0.42	-2.4
8,813	-		GFF5156	0.42	-2.1
8,813	-		GFF5156	0.42	+0.2
8,813	-		GFF5156	0.42	-2.6
8,854	+		GFF5156	0.45	-1.7
8,855	-		GFF5156	0.45	-2.5
8,875	+		GFF5156	0.46	-2.8
8,875	+		GFF5156	0.46	-5.9
8,875	+		GFF5156	0.46	-4.2
8,875	+		GFF5156	0.46	+1.8
8,875	+		GFF5156	0.46	-1.5
8,875	+		GFF5156	0.46	-0.2
8,875	+		GFF5156	0.46	-2.7
8,875	+		GFF5156	0.46	-0.8
8,875	+		GFF5156	0.46	-0.5
8,875	+		GFF5156	0.46	-4.5
8,875	+		GFF5156	0.46	-1.5
8,875	+		GFF5156	0.46	-2.3
8,875	+		GFF5156	0.46	-1.5
8,875	+		GFF5156	0.46	-1.6
8,875	+		GFF5156	0.46	-0.5
8,875	+		GFF5156	0.46	-2.3
8,875	+		GFF5156	0.46	-1.4
8,875	+		GFF5156	0.46	-3.2
8,875	+		GFF5156	0.46	-4.4
8,876	-		GFF5156	0.46	-5.8
8,876	-		GFF5156	0.46	-3.2
8,876	-		GFF5156	0.46	-1.5
8,876	-		GFF5156	0.46	-2.1
8,876	-		GFF5156	0.46	-1.2
8,876	-		GFF5156	0.46	-3.9
8,876	-		GFF5156	0.46	-2.6
8,876	-		GFF5156	0.46	-4.7
8,876	-		GFF5156	0.46	+0.8
8,876	-		GFF5156	0.46	-3.4
8,876	-		GFF5156	0.46	-2.0
8,876	-		GFF5156	0.46	-1.8
8,876	-		GFF5156	0.46	-4.6
8,876	-		GFF5156	0.46	-3.4
8,876	-		GFF5156	0.46	-3.8
8,876	-		GFF5156	0.46	-4.2
8,876	-		GFF5156	0.46	-2.8
8,876	-		GFF5156	0.46	-2.9
8,876	-		GFF5156	0.46	-3.7
8,876	-		GFF5156	0.46	-0.2
8,876	-		GFF5156	0.46	-2.8
8,876	-		GFF5156	0.46	-1.4
8,876	-		GFF5156	0.46	-1.8
8,968	+		GFF5156	0.53	-3.8
8,977	+		GFF5156	0.54	-0.8
8,977	+		GFF5156	0.54	-1.9
8,977	+		GFF5156	0.54	-0.5
8,977	+		GFF5156	0.54	-4.0
8,977	+		GFF5156	0.54	-3.1
8,977	+		GFF5156	0.54	-4.2
8,977	+		GFF5156	0.54	-4.0
8,977	+		GFF5156	0.54	-4.5
8,977	+		GFF5156	0.54	-2.3
8,977	+		GFF5156	0.54	-3.5
8,977	+		GFF5156	0.54	-0.8
8,978	-		GFF5156	0.54	-3.5
8,978	-		GFF5156	0.54	-1.2
8,978	-		GFF5156	0.54	-1.2
8,978	-		GFF5156	0.54	-0.5
8,978	-		GFF5156	0.54	-5.3
8,978	-		GFF5156	0.54	-4.3
8,978	-		GFF5156	0.54	-1.5
8,995	+		GFF5156	0.55	-5.1
8,995	+		GFF5156	0.55	-1.4
8,996	-		GFF5156	0.55	-2.6
8,996	-		GFF5156	0.55	-3.0
8,996	-		GFF5156	0.55	-3.0
8,996	-		GFF5156	0.55	-3.3
8,996	-		GFF5156	0.55	-1.6
8,996	-		GFF5156	0.55	-1.1
9,022	+		GFF5156	0.57	-3.3
9,022	+		GFF5156	0.57	-2.4
9,022	+		GFF5156	0.57	-4.8
9,022	+		GFF5156	0.57	-3.5
9,022	+		GFF5156	0.57	-4.7
9,023	-		GFF5156	0.57	-3.4
9,023	-		GFF5156	0.57	-4.7
9,023	-		GFF5156	0.57	-3.3
9,023	-		GFF5156	0.57	-4.7
9,023	-		GFF5156	0.57	-0.5
9,023	-		GFF5156	0.57	-1.4
9,023	-		GFF5156	0.57	-1.9
9,074	-		GFF5156	0.61	-2.0
9,074	-		GFF5156	0.61	-4.6
9,217	+		GFF5156	0.71	-0.7
9,217	+		GFF5156	0.71	-2.8
9,218	-		GFF5156	0.71	-0.8
9,218	-		GFF5156	0.71	+0.2
9,218	-		GFF5156	0.71	-5.4
9,218	-		GFF5156	0.71	-3.5
9,382	+		GFF5156	0.83	+0.2
9,382	+		GFF5156	0.83	-5.1
9,383	-		GFF5156	0.83	-5.2
9,383	-		GFF5156	0.83	-3.0
9,383	-		GFF5156	0.83	-3.6
9,383	-		GFF5156	0.83	-4.1
9,383	-		GFF5156	0.83	+0.2
9,383	-		GFF5156	0.83	-4.5
9,383	-		GFF5156	0.83	-3.2
9,385	+		GFF5156	0.83	-0.8
9,385	+		GFF5156	0.83	-4.6
9,385	+		GFF5156	0.83	-1.6
9,385	+		GFF5156	0.83	-3.7
9,385	+		GFF5156	0.83	-2.6
9,385	+		GFF5156	0.83	-0.8
9,385	+		GFF5156	0.83	-3.5
9,385	+		GFF5156	0.83	-3.2
9,385	+		GFF5156	0.83	-4.3
9,386	-		GFF5156	0.83	-1.4
9,386	-		GFF5156	0.83	-2.4
9,386	-		GFF5156	0.83	-3.3
9,386	-		GFF5156	0.83	-4.9
9,386	-		GFF5156	0.83	-5.6
9,386	-		GFF5156	0.83	-2.2
9,386	-		GFF5156	0.83	-3.9
9,386	-		GFF5156	0.83	-2.0
9,386	-		GFF5156	0.83	-1.4
9,386	-		GFF5156	0.83	-2.2
9,386	-		GFF5156	0.83	-1.2
9,386	-		GFF5156	0.83	-0.2
9,386	-		GFF5156	0.83	-5.4
9,386	-		GFF5156	0.83	-2.6
9,386	-		GFF5156	0.83	-2.3
9,386	-		GFF5156	0.83	-1.2
9,386	-		GFF5156	0.83	-1.4
9,617	+				-1.0
9,617	+				-0.9
9,617	+				-0.0
9,617	+				+0.1
9,617	+				-2.7
9,618	-				+0.2
9,618	-				+1.4
9,618	-				-0.0
9,618	-				+1.1
9,678	+				-1.8
9,678	+				+1.0
9,678	+				-3.1
9,678	+				+1.5
9,679	-				+1.1
9,679	-				-0.0
9,679	-				-0.6
9,679	-				-1.6
9,679	-				-0.4
9,679	-				-3.1
9,885	+		GFF5157	0.14	-3.5
9,897	+		GFF5157	0.15	+2.6
9,897	+		GFF5157	0.15	-1.7
9,897	+		GFF5157	0.15	+0.2
9,897	+		GFF5157	0.15	-3.2
9,897	+		GFF5157	0.15	-0.2
9,897	+		GFF5157	0.15	-1.0
9,897	+		GFF5157	0.15	-1.2
9,897	+		GFF5157	0.15	-3.4
9,897	+		GFF5157	0.15	+1.4
9,897	+		GFF5157	0.15	-1.8
9,897	+		GFF5157	0.15	-3.2
9,897	+		GFF5157	0.15	-1.8
9,897	+		GFF5157	0.15	-3.3
9,897	+		GFF5157	0.15	-3.7
9,897	+		GFF5157	0.15	-1.4
9,897	+		GFF5157	0.15	-1.1
9,897	+		GFF5157	0.15	-1.0
9,897	+		GFF5157	0.15	-1.0
9,897	+		GFF5157	0.15	-1.0
9,897	+		GFF5157	0.15	-1.4
9,897	+		GFF5157	0.15	-2.3
9,898	-		GFF5157	0.15	-0.5
9,898	-		GFF5157	0.15	-0.9
9,898	-		GFF5157	0.15	+0.0
9,898	-		GFF5157	0.15	-1.2
9,898	-		GFF5157	0.15	-1.4
9,898	-		GFF5157	0.15	-0.2
9,898	-		GFF5157	0.15	-1.4
9,898	-		GFF5157	0.15	-2.6
9,898	-		GFF5157	0.15	-0.5
9,898	-		GFF5157	0.15	-3.2
9,898	-		GFF5157	0.15	-0.1
9,898	-		GFF5157	0.15	-3.1
9,898	-		GFF5157	0.15	+0.8
9,898	-		GFF5157	0.15	+1.2
9,898	-		GFF5157	0.15	-0.5
10,104	+		GFF5157	0.26	-1.5
10,104	+		GFF5157	0.26	-1.0
10,359	+		GFF5157	0.40	+0.2
10,359	+		GFF5157	0.40	-1.0
10,359	+		GFF5157	0.40	-1.8
10,359	+		GFF5157	0.40	+0.2
10,360	-		GFF5157	0.40	+1.0
10,360	-		GFF5157	0.40	+3.5
10,479	+		GFF5157	0.46	-3.4
10,479	+		GFF5157	0.46	-2.2
10,479	+		GFF5157	0.46	-1.0
10,480	-		GFF5157	0.46	-1.0
10,480	-		GFF5157	0.46	-1.5
10,480	-		GFF5157	0.46	-2.7
10,480	-		GFF5157	0.46	+0.8
10,480	-		GFF5157	0.46	+1.8
10,539	+		GFF5157	0.49	-0.2
10,540	-		GFF5157	0.50	+1.6
10,540	-		GFF5157	0.50	-0.3
10,540	-		GFF5157	0.50	-1.6
10,540	-		GFF5157	0.50	-1.5
10,540	-		GFF5157	0.50	+0.5
10,540	-		GFF5157	0.50	-3.2
10,540	-		GFF5157	0.50	+0.8
10,614	+		GFF5157	0.54	-0.5
10,615	-		GFF5157	0.54	+0.4