Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5062 and GFF5063 are separated by 1 nucleotides GFF5063 and GFF5064 are separated by 39 nucleotides GFF5064 and GFF5065 are separated by 12 nucleotides
GFF5062 - Aspartyl-tRNA(Asn) amidotransferase subunit A (EC 6.3.5.6) @ Glutamyl-tRNA(Gln) amidotransferase subunit A (EC 6.3.5.7), at 163,657 to 165,171
GFF5062
GFF5063 - Aspartyl-tRNA(Asn) amidotransferase subunit B (EC 6.3.5.6) @ Glutamyl-tRNA(Gln) amidotransferase subunit B (EC 6.3.5.7), at 165,173 to 166,663
GFF5063
GFF5064 - Exonuclease SbcC, at 166,703 to 167,392
GFF5064
GFF5065 - Orotate phosphoribosyltransferase (EC 2.4.2.10), at 167,405 to 168,088
GFF5065
Position (kb) 165
166
167 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 166.896 kb on + strand, within GFF5064 at 166.896 kb on + strand, within GFF5064 at 166.896 kb on + strand, within GFF5064 at 166.896 kb on + strand, within GFF5064 at 166.896 kb on + strand, within GFF5064 at 166.896 kb on + strand, within GFF5064 at 166.896 kb on + strand, within GFF5064 at 166.896 kb on + strand, within GFF5064 at 166.896 kb on + strand, within GFF5064 at 166.896 kb on + strand, within GFF5064 at 166.896 kb on + strand, within GFF5064 at 166.896 kb on + strand, within GFF5064 at 166.897 kb on - strand, within GFF5064 at 166.897 kb on - strand, within GFF5064 at 166.897 kb on - strand, within GFF5064 at 166.897 kb on - strand, within GFF5064 at 166.897 kb on - strand, within GFF5064 at 166.897 kb on - strand, within GFF5064 at 166.897 kb on - strand, within GFF5064 at 166.897 kb on - strand, within GFF5064 at 166.897 kb on - strand, within GFF5064 at 166.897 kb on - strand, within GFF5064 at 166.897 kb on - strand, within GFF5064 at 167.139 kb on + strand, within GFF5064 at 167.139 kb on + strand, within GFF5064 at 167.139 kb on + strand, within GFF5064 at 167.139 kb on + strand, within GFF5064 at 167.140 kb on - strand, within GFF5064 at 167.140 kb on - strand, within GFF5064 at 167.336 kb on + strand at 167.336 kb on + strand at 167.337 kb on - strand at 167.399 kb on + strand at 167.399 kb on + strand at 167.399 kb on + strand at 167.399 kb on + strand at 167.400 kb on - strand at 167.400 kb on - strand at 167.400 kb on - strand at 167.400 kb on - strand at 167.430 kb on + strand at 167.487 kb on + strand, within GFF5065 at 167.487 kb on + strand, within GFF5065 at 167.550 kb on + strand, within GFF5065 at 167.550 kb on + strand, within GFF5065 at 167.551 kb on - strand, within GFF5065
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 166,896 + GFF5064 0.28 +0.8 166,896 + GFF5064 0.28 -2.3 166,896 + GFF5064 0.28 +0.2 166,896 + GFF5064 0.28 -1.0 166,896 + GFF5064 0.28 -0.5 166,896 + GFF5064 0.28 -3.0 166,896 + GFF5064 0.28 +1.4 166,896 + GFF5064 0.28 -0.2 166,896 + GFF5064 0.28 -0.7 166,896 + GFF5064 0.28 +0.2 166,896 + GFF5064 0.28 +0.7 166,896 + GFF5064 0.28 -1.0 166,897 - GFF5064 0.28 -1.8 166,897 - GFF5064 0.28 -1.7 166,897 - GFF5064 0.28 -0.3 166,897 - GFF5064 0.28 +0.2 166,897 - GFF5064 0.28 -0.8 166,897 - GFF5064 0.28 -2.4 166,897 - GFF5064 0.28 -0.5 166,897 - GFF5064 0.28 +0.3 166,897 - GFF5064 0.28 +0.5 166,897 - GFF5064 0.28 +1.5 166,897 - GFF5064 0.28 +1.7 167,139 + GFF5064 0.63 -1.2 167,139 + GFF5064 0.63 -1.8 167,139 + GFF5064 0.63 +0.1 167,139 + GFF5064 0.63 -1.5 167,140 - GFF5064 0.63 -2.8 167,140 - GFF5064 0.63 -0.3 167,336 + +1.5 167,336 + +0.2 167,337 - -0.3 167,399 + -1.4 167,399 + +1.5 167,399 + -1.1 167,399 + -0.6 167,400 - -1.7 167,400 - -1.1 167,400 - -1.0 167,400 - -0.6 167,430 + -2.8 167,487 + GFF5065 0.12 -1.5 167,487 + GFF5065 0.12 -1.9 167,550 + GFF5065 0.21 -0.8 167,550 + GFF5065 0.21 -0.8 167,551 - GFF5065 0.21 -1.1
Or see this region's nucleotide sequence