Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4734 and GFF4735 are separated by 24 nucleotides GFF4735 and GFF4736 overlap by 4 nucleotides GFF4736 and GFF4737 are separated by 13 nucleotides
GFF4734 - Nitrite reductase [NAD(P)H] large subunit (EC 1.7.1.4), at 98,751 to 101,219
GFF4734
GFF4735 - Nitrate ABC transporter, ATP-binding protein, at 101,244 to 102,053
GFF4735
GFF4736 - Nitrate ABC transporter, permease protein, at 102,050 to 102,970
GFF4736
GFF4737 - Nitrate ABC transporter, substrate-binding protein, at 102,984 to 104,228
GFF4737
Position (kb) 101
102
103 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 100.264 kb on + strand, within GFF4734 at 100.264 kb on + strand, within GFF4734 at 100.264 kb on + strand, within GFF4734 at 100.265 kb on - strand, within GFF4734 at 100.378 kb on + strand, within GFF4734 at 100.378 kb on + strand, within GFF4734 at 100.379 kb on - strand, within GFF4734 at 100.901 kb on - strand, within GFF4734 at 101.077 kb on + strand at 101.077 kb on + strand at 101.077 kb on + strand at 101.078 kb on - strand at 101.078 kb on - strand at 101.116 kb on + strand at 101.116 kb on + strand at 101.116 kb on + strand at 101.281 kb on + strand at 101.281 kb on + strand at 101.282 kb on - strand at 101.317 kb on + strand at 101.317 kb on + strand at 101.317 kb on + strand at 101.317 kb on + strand at 101.318 kb on - strand at 101.749 kb on + strand, within GFF4735 at 101.749 kb on + strand, within GFF4735 at 101.749 kb on + strand, within GFF4735 at 101.749 kb on + strand, within GFF4735 at 101.750 kb on - strand, within GFF4735 at 101.750 kb on - strand, within GFF4735 at 101.751 kb on + strand, within GFF4735 at 101.751 kb on + strand, within GFF4735 at 101.751 kb on + strand, within GFF4735 at 101.751 kb on + strand, within GFF4735 at 101.751 kb on + strand, within GFF4735 at 101.751 kb on + strand, within GFF4735 at 101.751 kb on + strand, within GFF4735 at 101.751 kb on + strand, within GFF4735 at 101.752 kb on - strand, within GFF4735 at 101.752 kb on - strand, within GFF4735 at 101.752 kb on - strand, within GFF4735 at 101.752 kb on - strand, within GFF4735 at 102.034 kb on + strand at 102.034 kb on + strand at 102.034 kb on + strand at 102.035 kb on - strand at 102.282 kb on + strand, within GFF4736 at 102.282 kb on + strand, within GFF4736 at 102.282 kb on + strand, within GFF4736 at 102.282 kb on + strand, within GFF4736 at 102.282 kb on + strand, within GFF4736 at 102.282 kb on + strand, within GFF4736 at 102.282 kb on + strand, within GFF4736 at 102.283 kb on - strand, within GFF4736 at 102.360 kb on + strand, within GFF4736 at 102.361 kb on - strand, within GFF4736 at 102.361 kb on - strand, within GFF4736 at 102.675 kb on + strand, within GFF4736 at 102.675 kb on + strand, within GFF4736 at 102.676 kb on - strand, within GFF4736 at 102.676 kb on - strand, within GFF4736 at 102.676 kb on - strand, within GFF4736 at 102.676 kb on - strand, within GFF4736 at 102.676 kb on - strand, within GFF4736 at 103.012 kb on + strand at 103.012 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 100,264 + GFF4734 0.61 -1.1 100,264 + GFF4734 0.61 +0.6 100,264 + GFF4734 0.61 +1.3 100,265 - GFF4734 0.61 -0.5 100,378 + GFF4734 0.66 +2.0 100,378 + GFF4734 0.66 -2.2 100,379 - GFF4734 0.66 +0.1 100,901 - GFF4734 0.87 -1.0 101,077 + +1.2 101,077 + -2.5 101,077 + -0.2 101,078 - -2.3 101,078 - +1.2 101,116 + +2.9 101,116 + -0.9 101,116 + -0.8 101,281 + +0.3 101,281 + -0.7 101,282 - +0.8 101,317 + -1.6 101,317 + -0.5 101,317 + +1.3 101,317 + +0.4 101,318 - -0.5 101,749 + GFF4735 0.62 +1.3 101,749 + GFF4735 0.62 +0.6 101,749 + GFF4735 0.62 -0.9 101,749 + GFF4735 0.62 -1.6 101,750 - GFF4735 0.62 -2.6 101,750 - GFF4735 0.62 -1.7 101,751 + GFF4735 0.63 +0.3 101,751 + GFF4735 0.63 -0.6 101,751 + GFF4735 0.63 -0.2 101,751 + GFF4735 0.63 -0.9 101,751 + GFF4735 0.63 -2.8 101,751 + GFF4735 0.63 +1.4 101,751 + GFF4735 0.63 -0.9 101,751 + GFF4735 0.63 -2.0 101,752 - GFF4735 0.63 +0.4 101,752 - GFF4735 0.63 +0.3 101,752 - GFF4735 0.63 +1.4 101,752 - GFF4735 0.63 -4.0 102,034 + +0.3 102,034 + -1.4 102,034 + -1.3 102,035 - -0.5 102,282 + GFF4736 0.25 -2.5 102,282 + GFF4736 0.25 -3.3 102,282 + GFF4736 0.25 +0.2 102,282 + GFF4736 0.25 +0.6 102,282 + GFF4736 0.25 -2.4 102,282 + GFF4736 0.25 -0.9 102,282 + GFF4736 0.25 -1.4 102,283 - GFF4736 0.25 -2.7 102,360 + GFF4736 0.34 -3.2 102,361 - GFF4736 0.34 +1.9 102,361 - GFF4736 0.34 -0.3 102,675 + GFF4736 0.68 +0.3 102,675 + GFF4736 0.68 +0.1 102,676 - GFF4736 0.68 +0.9 102,676 - GFF4736 0.68 +0.0 102,676 - GFF4736 0.68 -0.4 102,676 - GFF4736 0.68 -1.9 102,676 - GFF4736 0.68 -0.4 103,012 + -0.1 103,012 + -1.7
Or see this region's nucleotide sequence