Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4699 and GFF4700 overlap by 1 nucleotides GFF4700 and GFF4701 overlap by 4 nucleotides GFF4701 and GFF4702 overlap by 4 nucleotides
GFF4699 - ABC transporter, substrate-binding protein (cluster 1, maltose/g3p/polyamine/iron), at 62,722 to 64,008
GFF4699
GFF4700 - Various polyols ABC transporter, permease protein 1, at 64,008 to 64,892
GFF4700
GFF4701 - Various polyols ABC transporter, permease protein 2, at 64,889 to 65,731
GFF4701
GFF4702 - ABC transporter, ATP-binding protein (cluster 1, maltose/g3p/polyamine/iron); ABC transporter, ATP-binding protein (cluster 10, nitrate/sulfonate/bicarbonate), at 65,728 to 66,867
GFF4702
Position (kb) 64
65 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 63.061 kb on + strand, within GFF4699 at 63.061 kb on + strand, within GFF4699 at 63.061 kb on + strand, within GFF4699 at 63.061 kb on + strand, within GFF4699 at 63.061 kb on + strand, within GFF4699 at 63.062 kb on - strand, within GFF4699 at 63.062 kb on - strand, within GFF4699 at 63.062 kb on - strand, within GFF4699 at 63.062 kb on - strand, within GFF4699 at 63.062 kb on - strand, within GFF4699 at 63.065 kb on - strand, within GFF4699 at 63.077 kb on - strand, within GFF4699 at 63.077 kb on - strand, within GFF4699 at 63.077 kb on - strand, within GFF4699 at 63.077 kb on - strand, within GFF4699 at 63.082 kb on + strand, within GFF4699 at 63.083 kb on - strand, within GFF4699 at 63.083 kb on - strand, within GFF4699 at 63.083 kb on - strand, within GFF4699 at 63.083 kb on - strand, within GFF4699 at 63.219 kb on + strand, within GFF4699 at 63.219 kb on + strand, within GFF4699 at 63.219 kb on + strand, within GFF4699 at 63.421 kb on + strand, within GFF4699 at 63.421 kb on + strand, within GFF4699 at 63.421 kb on + strand, within GFF4699 at 63.422 kb on - strand, within GFF4699 at 63.422 kb on - strand, within GFF4699 at 63.422 kb on - strand, within GFF4699 at 63.422 kb on - strand, within GFF4699 at 63.440 kb on - strand, within GFF4699 at 63.440 kb on - strand, within GFF4699 at 63.586 kb on + strand, within GFF4699 at 63.802 kb on + strand, within GFF4699 at 63.973 kb on + strand at 63.973 kb on + strand at 64.007 kb on - strand at 64.007 kb on - strand at 64.007 kb on - strand at 64.099 kb on + strand, within GFF4700 at 64.100 kb on - strand, within GFF4700 at 64.182 kb on + strand, within GFF4700 at 64.182 kb on + strand, within GFF4700 at 64.182 kb on + strand, within GFF4700 at 64.183 kb on - strand, within GFF4700 at 64.183 kb on - strand, within GFF4700 at 64.183 kb on - strand, within GFF4700 at 64.291 kb on + strand, within GFF4700 at 64.292 kb on - strand, within GFF4700 at 64.292 kb on - strand, within GFF4700 at 64.292 kb on - strand, within GFF4700 at 64.292 kb on - strand, within GFF4700 at 64.428 kb on + strand, within GFF4700 at 64.429 kb on - strand, within GFF4700 at 64.429 kb on - strand, within GFF4700 at 64.429 kb on - strand, within GFF4700 at 64.429 kb on - strand, within GFF4700 at 64.434 kb on + strand, within GFF4700 at 64.434 kb on + strand, within GFF4700 at 64.434 kb on + strand, within GFF4700 at 64.434 kb on + strand, within GFF4700 at 64.434 kb on + strand, within GFF4700 at 64.434 kb on + strand, within GFF4700 at 64.434 kb on + strand, within GFF4700 at 64.434 kb on + strand, within GFF4700 at 64.434 kb on + strand, within GFF4700 at 64.434 kb on + strand, within GFF4700 at 64.435 kb on - strand, within GFF4700 at 64.435 kb on - strand, within GFF4700 at 64.435 kb on - strand, within GFF4700 at 64.435 kb on - strand, within GFF4700 at 64.435 kb on - strand, within GFF4700 at 64.623 kb on + strand, within GFF4700 at 64.623 kb on + strand, within GFF4700 at 64.623 kb on + strand, within GFF4700 at 64.623 kb on + strand, within GFF4700 at 64.623 kb on + strand, within GFF4700 at 64.624 kb on - strand, within GFF4700 at 64.624 kb on - strand, within GFF4700 at 64.624 kb on - strand, within GFF4700 at 64.624 kb on - strand, within GFF4700 at 64.624 kb on - strand, within GFF4700 at 64.624 kb on - strand, within GFF4700 at 64.624 kb on - strand, within GFF4700 at 64.624 kb on - strand, within GFF4700 at 64.629 kb on + strand, within GFF4700 at 64.630 kb on - strand, within GFF4700 at 64.630 kb on - strand, within GFF4700 at 64.630 kb on - strand, within GFF4700 at 64.716 kb on + strand, within GFF4700 at 64.716 kb on + strand, within GFF4700 at 64.716 kb on + strand, within GFF4700 at 64.716 kb on + strand, within GFF4700 at 64.717 kb on - strand, within GFF4700 at 64.717 kb on - strand, within GFF4700 at 64.717 kb on - strand, within GFF4700 at 64.767 kb on + strand, within GFF4700 at 64.767 kb on + strand, within GFF4700 at 64.767 kb on + strand, within GFF4700 at 64.767 kb on + strand, within GFF4700 at 64.767 kb on + strand, within GFF4700 at 64.767 kb on + strand, within GFF4700 at 64.767 kb on + strand, within GFF4700 at 64.767 kb on + strand, within GFF4700 at 64.767 kb on + strand, within GFF4700 at 64.767 kb on + strand, within GFF4700 at 64.767 kb on + strand, within GFF4700 at 64.767 kb on + strand, within GFF4700 at 64.767 kb on + strand, within GFF4700 at 64.768 kb on - strand, within GFF4700 at 64.768 kb on - strand, within GFF4700 at 64.768 kb on - strand, within GFF4700 at 64.768 kb on - strand, within GFF4700 at 64.768 kb on - strand, within GFF4700 at 64.768 kb on - strand, within GFF4700 at 64.768 kb on - strand, within GFF4700 at 64.768 kb on - strand, within GFF4700 at 64.768 kb on - strand, within GFF4700 at 64.768 kb on - strand, within GFF4700 at 64.768 kb on - strand, within GFF4700 at 64.803 kb on - strand, within GFF4700 at 64.809 kb on + strand at 64.809 kb on + strand at 64.809 kb on + strand at 64.809 kb on + strand at 64.809 kb on + strand at 64.810 kb on - strand at 64.810 kb on - strand at 64.810 kb on - strand at 64.810 kb on - strand at 64.810 kb on - strand at 64.863 kb on + strand at 64.863 kb on + strand at 64.863 kb on + strand at 64.863 kb on + strand at 64.863 kb on + strand at 64.863 kb on + strand at 64.863 kb on + strand at 64.863 kb on + strand at 64.863 kb on + strand at 64.864 kb on - strand at 64.864 kb on - strand at 64.864 kb on - strand at 64.864 kb on - strand at 64.864 kb on - strand at 64.864 kb on - strand at 64.864 kb on - strand at 64.864 kb on - strand at 64.864 kb on - strand at 64.864 kb on - strand at 65.069 kb on + strand, within GFF4701 at 65.069 kb on + strand, within GFF4701 at 65.069 kb on + strand, within GFF4701 at 65.069 kb on + strand, within GFF4701 at 65.069 kb on + strand, within GFF4701 at 65.069 kb on + strand, within GFF4701 at 65.069 kb on + strand, within GFF4701 at 65.069 kb on + strand, within GFF4701 at 65.069 kb on + strand, within GFF4701 at 65.069 kb on + strand, within GFF4701 at 65.069 kb on + strand, within GFF4701 at 65.070 kb on - strand, within GFF4701 at 65.070 kb on - strand, within GFF4701 at 65.070 kb on - strand, within GFF4701 at 65.070 kb on - strand, within GFF4701 at 65.070 kb on - strand, within GFF4701 at 65.070 kb on - strand, within GFF4701 at 65.070 kb on - strand, within GFF4701 at 65.070 kb on - strand, within GFF4701 at 65.070 kb on - strand, within GFF4701 at 65.075 kb on + strand, within GFF4701 at 65.075 kb on + strand, within GFF4701 at 65.075 kb on + strand, within GFF4701 at 65.075 kb on + strand, within GFF4701 at 65.075 kb on + strand, within GFF4701 at 65.075 kb on + strand, within GFF4701 at 65.075 kb on + strand, within GFF4701 at 65.075 kb on + strand, within GFF4701 at 65.075 kb on + strand, within GFF4701 at 65.075 kb on + strand, within GFF4701 at 65.075 kb on + strand, within GFF4701 at 65.076 kb on - strand, within GFF4701 at 65.076 kb on - strand, within GFF4701 at 65.076 kb on - strand, within GFF4701 at 65.076 kb on - strand, within GFF4701 at 65.076 kb on - strand, within GFF4701 at 65.076 kb on - strand, within GFF4701 at 65.076 kb on - strand, within GFF4701 at 65.076 kb on - strand, within GFF4701 at 65.076 kb on - strand, within GFF4701 at 65.117 kb on + strand, within GFF4701 at 65.178 kb on - strand, within GFF4701 at 65.303 kb on + strand, within GFF4701 at 65.304 kb on - strand, within GFF4701 at 65.304 kb on - strand, within GFF4701 at 65.304 kb on - strand, within GFF4701 at 65.304 kb on - strand, within GFF4701 at 65.333 kb on + strand, within GFF4701 at 65.333 kb on + strand, within GFF4701 at 65.334 kb on - strand, within GFF4701 at 65.373 kb on + strand, within GFF4701 at 65.374 kb on - strand, within GFF4701 at 65.439 kb on - strand, within GFF4701
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 63,061 + GFF4699 0.26 +0.8 63,061 + GFF4699 0.26 +1.7 63,061 + GFF4699 0.26 -0.2 63,061 + GFF4699 0.26 -2.2 63,061 + GFF4699 0.26 +0.4 63,062 - GFF4699 0.26 -2.7 63,062 - GFF4699 0.26 -0.4 63,062 - GFF4699 0.26 -0.5 63,062 - GFF4699 0.26 +0.7 63,062 - GFF4699 0.26 -0.2 63,065 - GFF4699 0.27 -0.6 63,077 - GFF4699 0.28 +0.6 63,077 - GFF4699 0.28 +0.4 63,077 - GFF4699 0.28 +2.0 63,077 - GFF4699 0.28 -0.1 63,082 + GFF4699 0.28 +0.2 63,083 - GFF4699 0.28 +1.1 63,083 - GFF4699 0.28 -1.9 63,083 - GFF4699 0.28 -1.2 63,083 - GFF4699 0.28 +0.2 63,219 + GFF4699 0.39 +0.2 63,219 + GFF4699 0.39 +0.2 63,219 + GFF4699 0.39 -2.7 63,421 + GFF4699 0.54 -3.1 63,421 + GFF4699 0.54 -0.8 63,421 + GFF4699 0.54 -1.9 63,422 - GFF4699 0.54 +0.6 63,422 - GFF4699 0.54 +1.4 63,422 - GFF4699 0.54 +1.4 63,422 - GFF4699 0.54 +0.6 63,440 - GFF4699 0.56 -1.4 63,440 - GFF4699 0.56 +2.3 63,586 + GFF4699 0.67 +2.4 63,802 + GFF4699 0.84 -0.9 63,973 + +0.7 63,973 + +0.8 64,007 - +1.6 64,007 - +0.9 64,007 - +1.0 64,099 + GFF4700 0.10 -0.0 64,100 - GFF4700 0.10 -3.6 64,182 + GFF4700 0.20 +0.8 64,182 + GFF4700 0.20 +2.0 64,182 + GFF4700 0.20 +0.3 64,183 - GFF4700 0.20 -0.6 64,183 - GFF4700 0.20 -0.9 64,183 - GFF4700 0.20 -1.4 64,291 + GFF4700 0.32 -1.5 64,292 - GFF4700 0.32 -1.7 64,292 - GFF4700 0.32 -2.9 64,292 - GFF4700 0.32 -2.8 64,292 - GFF4700 0.32 +2.0 64,428 + GFF4700 0.47 -1.5 64,429 - GFF4700 0.48 -2.6 64,429 - GFF4700 0.48 +0.5 64,429 - GFF4700 0.48 +0.0 64,429 - GFF4700 0.48 +1.1 64,434 + GFF4700 0.48 -3.9 64,434 + GFF4700 0.48 -0.2 64,434 + GFF4700 0.48 -0.7 64,434 + GFF4700 0.48 -2.3 64,434 + GFF4700 0.48 -1.2 64,434 + GFF4700 0.48 -1.8 64,434 + GFF4700 0.48 -2.6 64,434 + GFF4700 0.48 +1.3 64,434 + GFF4700 0.48 -0.4 64,434 + GFF4700 0.48 -1.1 64,435 - GFF4700 0.48 +0.9 64,435 - GFF4700 0.48 -1.4 64,435 - GFF4700 0.48 -0.2 64,435 - GFF4700 0.48 +2.9 64,435 - GFF4700 0.48 -0.0 64,623 + GFF4700 0.69 +0.3 64,623 + GFF4700 0.69 -0.2 64,623 + GFF4700 0.69 +0.1 64,623 + GFF4700 0.69 +1.4 64,623 + GFF4700 0.69 -1.2 64,624 - GFF4700 0.70 +0.2 64,624 - GFF4700 0.70 -0.5 64,624 - GFF4700 0.70 -0.2 64,624 - GFF4700 0.70 -1.7 64,624 - GFF4700 0.70 -0.9 64,624 - GFF4700 0.70 -1.2 64,624 - GFF4700 0.70 +1.4 64,624 - GFF4700 0.70 -0.2 64,629 + GFF4700 0.70 +1.2 64,630 - GFF4700 0.70 -1.8 64,630 - GFF4700 0.70 -2.2 64,630 - GFF4700 0.70 +1.0 64,716 + GFF4700 0.80 -1.9 64,716 + GFF4700 0.80 +0.5 64,716 + GFF4700 0.80 -1.6 64,716 + GFF4700 0.80 -1.8 64,717 - GFF4700 0.80 +0.2 64,717 - GFF4700 0.80 -0.4 64,717 - GFF4700 0.80 -0.4 64,767 + GFF4700 0.86 -0.2 64,767 + GFF4700 0.86 +1.2 64,767 + GFF4700 0.86 -1.4 64,767 + GFF4700 0.86 -0.1 64,767 + GFF4700 0.86 -0.3 64,767 + GFF4700 0.86 +2.2 64,767 + GFF4700 0.86 -1.9 64,767 + GFF4700 0.86 +0.5 64,767 + GFF4700 0.86 -0.7 64,767 + GFF4700 0.86 -3.0 64,767 + GFF4700 0.86 -1.2 64,767 + GFF4700 0.86 -2.6 64,767 + GFF4700 0.86 -1.9 64,768 - GFF4700 0.86 -1.2 64,768 - GFF4700 0.86 -1.6 64,768 - GFF4700 0.86 -0.9 64,768 - GFF4700 0.86 -2.2 64,768 - GFF4700 0.86 +0.2 64,768 - GFF4700 0.86 +0.6 64,768 - GFF4700 0.86 -0.2 64,768 - GFF4700 0.86 +0.8 64,768 - GFF4700 0.86 +2.7 64,768 - GFF4700 0.86 +1.0 64,768 - GFF4700 0.86 +0.2 64,803 - GFF4700 0.90 -0.8 64,809 + -1.6 64,809 + +0.1 64,809 + +4.3 64,809 + -3.4 64,809 + -0.2 64,810 - +0.5 64,810 - +0.4 64,810 - -1.9 64,810 - -4.4 64,810 - -1.9 64,863 + -3.3 64,863 + +0.9 64,863 + -1.7 64,863 + -2.8 64,863 + +0.6 64,863 + -1.3 64,863 + +1.4 64,863 + +1.4 64,863 + +0.4 64,864 - -1.6 64,864 - +0.0 64,864 - -3.9 64,864 - +1.4 64,864 - +0.1 64,864 - -0.4 64,864 - -0.9 64,864 - -0.4 64,864 - +1.7 64,864 - -1.2 65,069 + GFF4701 0.21 -0.4 65,069 + GFF4701 0.21 +2.9 65,069 + GFF4701 0.21 -0.4 65,069 + GFF4701 0.21 +0.4 65,069 + GFF4701 0.21 -0.2 65,069 + GFF4701 0.21 +0.4 65,069 + GFF4701 0.21 -2.0 65,069 + GFF4701 0.21 -1.1 65,069 + GFF4701 0.21 +0.4 65,069 + GFF4701 0.21 -0.1 65,069 + GFF4701 0.21 +1.3 65,070 - GFF4701 0.21 -4.3 65,070 - GFF4701 0.21 -0.7 65,070 - GFF4701 0.21 +0.2 65,070 - GFF4701 0.21 +0.4 65,070 - GFF4701 0.21 -1.2 65,070 - GFF4701 0.21 -0.2 65,070 - GFF4701 0.21 +0.9 65,070 - GFF4701 0.21 +0.8 65,070 - GFF4701 0.21 +2.0 65,075 + GFF4701 0.22 -0.4 65,075 + GFF4701 0.22 -2.7 65,075 + GFF4701 0.22 -1.5 65,075 + GFF4701 0.22 +1.0 65,075 + GFF4701 0.22 -0.6 65,075 + GFF4701 0.22 -1.5 65,075 + GFF4701 0.22 -0.2 65,075 + GFF4701 0.22 -2.6 65,075 + GFF4701 0.22 +0.0 65,075 + GFF4701 0.22 -1.3 65,075 + GFF4701 0.22 -1.4 65,076 - GFF4701 0.22 +0.7 65,076 - GFF4701 0.22 -0.5 65,076 - GFF4701 0.22 +0.0 65,076 - GFF4701 0.22 +0.7 65,076 - GFF4701 0.22 -3.1 65,076 - GFF4701 0.22 -3.6 65,076 - GFF4701 0.22 -0.9 65,076 - GFF4701 0.22 -0.2 65,076 - GFF4701 0.22 +0.2 65,117 + GFF4701 0.27 -2.6 65,178 - GFF4701 0.34 +1.2 65,303 + GFF4701 0.49 +0.2 65,304 - GFF4701 0.49 -0.2 65,304 - GFF4701 0.49 -4.2 65,304 - GFF4701 0.49 -1.3 65,304 - GFF4701 0.49 -1.7 65,333 + GFF4701 0.53 +0.3 65,333 + GFF4701 0.53 -1.9 65,334 - GFF4701 0.53 -0.5 65,373 + GFF4701 0.57 -0.7 65,374 - GFF4701 0.58 -2.0 65,439 - GFF4701 0.65 -3.8
Or see this region's nucleotide sequence