Strain Fitness in Variovorax sp. SCN45 around GFF470

Experiment: Community=arabino-guar; Passage=4

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF468 and GFF469 overlap by 31 nucleotidesGFF469 and GFF470 overlap by 4 nucleotidesGFF470 and GFF471 are separated by 101 nucleotides GFF468 - Transcriptional regulator, LysR family, at 506,422 to 507,360 GFF468 GFF469 - hypothetical protein, at 507,330 to 507,869 GFF469 GFF470 - Transcriptional regulator, LysR family, at 507,866 to 508,840 GFF470 GFF471 - Dihydroxy-acid dehydratase (EC 4.2.1.9), at 508,942 to 510,636 GFF471 Position (kb) 507 508 509Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 506.902 kb on + strand, within GFF468at 506.902 kb on + strand, within GFF468at 506.902 kb on + strand, within GFF468at 506.903 kb on - strand, within GFF468at 506.965 kb on + strand, within GFF468at 506.965 kb on + strand, within GFF468at 506.965 kb on + strand, within GFF468at 506.965 kb on + strand, within GFF468at 506.965 kb on + strand, within GFF468at 506.965 kb on + strand, within GFF468at 506.965 kb on + strand, within GFF468at 506.966 kb on - strand, within GFF468at 506.966 kb on - strand, within GFF468at 506.966 kb on - strand, within GFF468at 506.966 kb on - strand, within GFF468at 506.966 kb on - strand, within GFF468at 506.966 kb on - strand, within GFF468at 506.966 kb on - strand, within GFF468at 506.966 kb on - strand, within GFF468at 506.966 kb on - strand, within GFF468at 506.966 kb on - strand, within GFF468at 506.966 kb on - strand, within GFF468at 507.073 kb on + strand, within GFF468at 507.073 kb on + strand, within GFF468at 507.073 kb on + strand, within GFF468at 507.073 kb on + strand, within GFF468at 507.073 kb on + strand, within GFF468at 507.073 kb on + strand, within GFF468at 507.073 kb on + strand, within GFF468at 507.073 kb on + strand, within GFF468at 507.073 kb on + strand, within GFF468at 507.073 kb on + strand, within GFF468at 507.073 kb on + strand, within GFF468at 507.073 kb on + strand, within GFF468at 507.073 kb on + strand, within GFF468at 507.073 kb on + strand, within GFF468at 507.073 kb on + strand, within GFF468at 507.073 kb on + strand, within GFF468at 507.074 kb on - strand, within GFF468at 507.074 kb on - strand, within GFF468at 507.074 kb on - strand, within GFF468at 507.074 kb on - strand, within GFF468at 507.074 kb on - strand, within GFF468at 507.121 kb on + strand, within GFF468at 507.121 kb on + strand, within GFF468at 507.122 kb on - strand, within GFF468at 507.122 kb on - strand, within GFF468at 507.122 kb on - strand, within GFF468at 507.122 kb on - strand, within GFF468at 507.208 kb on + strand, within GFF468at 507.209 kb on - strand, within GFF468at 507.209 kb on - strand, within GFF468at 507.403 kb on + strand, within GFF469at 507.403 kb on + strand, within GFF469at 507.404 kb on - strand, within GFF469at 507.484 kb on + strand, within GFF469at 507.484 kb on + strand, within GFF469at 507.484 kb on + strand, within GFF469at 507.485 kb on - strand, within GFF469at 507.532 kb on + strand, within GFF469at 507.640 kb on + strand, within GFF469at 507.640 kb on + strand, within GFF469at 507.640 kb on + strand, within GFF469at 507.640 kb on + strand, within GFF469at 507.640 kb on + strand, within GFF469at 507.641 kb on - strand, within GFF469at 507.641 kb on - strand, within GFF469at 507.748 kb on + strand, within GFF469at 507.748 kb on + strand, within GFF469at 507.749 kb on - strand, within GFF469at 507.766 kb on + strand, within GFF469at 507.870 kb on - strandat 508.053 kb on + strand, within GFF470at 508.053 kb on + strand, within GFF470at 508.053 kb on + strand, within GFF470at 508.054 kb on - strand, within GFF470at 508.054 kb on - strand, within GFF470at 508.191 kb on + strand, within GFF470at 508.191 kb on + strand, within GFF470at 508.192 kb on - strand, within GFF470at 508.192 kb on - strand, within GFF470at 508.192 kb on - strand, within GFF470at 508.192 kb on - strand, within GFF470at 508.851 kb on + strandat 508.901 kb on + strandat 508.901 kb on + strandat 508.902 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4
remove
506,902 + GFF468 0.51 -2.4
506,902 + GFF468 0.51 -3.3
506,902 + GFF468 0.51 -2.2
506,903 - GFF468 0.51 +1.4
506,965 + GFF468 0.58 +0.4
506,965 + GFF468 0.58 -1.2
506,965 + GFF468 0.58 -1.0
506,965 + GFF468 0.58 -3.3
506,965 + GFF468 0.58 -1.4
506,965 + GFF468 0.58 -4.0
506,965 + GFF468 0.58 +1.4
506,966 - GFF468 0.58 -3.4
506,966 - GFF468 0.58 +0.4
506,966 - GFF468 0.58 -3.2
506,966 - GFF468 0.58 -1.0
506,966 - GFF468 0.58 -2.1
506,966 - GFF468 0.58 -0.0
506,966 - GFF468 0.58 -0.4
506,966 - GFF468 0.58 +0.5
506,966 - GFF468 0.58 -1.2
506,966 - GFF468 0.58 -1.6
506,966 - GFF468 0.58 -0.6
507,073 + GFF468 0.69 -2.7
507,073 + GFF468 0.69 +0.8
507,073 + GFF468 0.69 -0.1
507,073 + GFF468 0.69 +0.9
507,073 + GFF468 0.69 +0.8
507,073 + GFF468 0.69 -0.2
507,073 + GFF468 0.69 -4.3
507,073 + GFF468 0.69 -0.3
507,073 + GFF468 0.69 -0.6
507,073 + GFF468 0.69 +0.3
507,073 + GFF468 0.69 -1.2
507,073 + GFF468 0.69 -0.9
507,073 + GFF468 0.69 -1.2
507,073 + GFF468 0.69 +0.4
507,073 + GFF468 0.69 -0.6
507,073 + GFF468 0.69 +0.4
507,074 - GFF468 0.69 -1.3
507,074 - GFF468 0.69 -3.8
507,074 - GFF468 0.69 +1.2
507,074 - GFF468 0.69 +0.6
507,074 - GFF468 0.69 +0.1
507,121 + GFF468 0.74 -0.4
507,121 + GFF468 0.74 -2.2
507,122 - GFF468 0.75 +1.8
507,122 - GFF468 0.75 -2.4
507,122 - GFF468 0.75 +0.8
507,122 - GFF468 0.75 -1.4
507,208 + GFF468 0.84 +0.5
507,209 - GFF468 0.84 -1.9
507,209 - GFF468 0.84 +0.5
507,403 + GFF469 0.14 -0.6
507,403 + GFF469 0.14 +0.8
507,404 - GFF469 0.14 -0.2
507,484 + GFF469 0.29 -1.3
507,484 + GFF469 0.29 -1.2
507,484 + GFF469 0.29 -1.8
507,485 - GFF469 0.29 -2.4
507,532 + GFF469 0.37 +0.3
507,640 + GFF469 0.57 +0.9
507,640 + GFF469 0.57 -2.6
507,640 + GFF469 0.57 +1.4
507,640 + GFF469 0.57 +1.1
507,640 + GFF469 0.57 -2.6
507,641 - GFF469 0.58 -0.0
507,641 - GFF469 0.58 -2.2
507,748 + GFF469 0.77 -1.5
507,748 + GFF469 0.77 -2.2
507,749 - GFF469 0.78 -1.6
507,766 + GFF469 0.81 +1.1
507,870 - +0.4
508,053 + GFF470 0.19 -1.1
508,053 + GFF470 0.19 -0.1
508,053 + GFF470 0.19 +0.6
508,054 - GFF470 0.19 +0.6
508,054 - GFF470 0.19 -1.6
508,191 + GFF470 0.33 -1.0
508,191 + GFF470 0.33 +0.6
508,192 - GFF470 0.33 +0.4
508,192 - GFF470 0.33 +0.8
508,192 - GFF470 0.33 -1.0
508,192 - GFF470 0.33 -0.2
508,851 + +0.2
508,901 + -2.6
508,901 + -0.6
508,902 - +0.4

Or see this region's nucleotide sequence