Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4554 and GFF4555 are separated by 103 nucleotides GFF4555 and GFF4556 overlap by 4 nucleotides GFF4556 and GFF4557 overlap by 4 nucleotides
GFF4554 - Protease HtpX, at 191,095 to 191,970
GFF4554
GFF4555 - Putative transmembrane protein, at 192,074 to 192,829
GFF4555
GFF4556 - hypothetical protein, at 192,826 to 193,626
GFF4556
GFF4557 - Dihydroorotase (EC 3.5.2.3), at 193,623 to 194,654
GFF4557
Position (kb) 192
193 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 191.074 kb on - strand at 191.074 kb on - strand at 191.074 kb on - strand at 191.074 kb on - strand at 191.086 kb on + strand at 191.086 kb on + strand at 191.378 kb on + strand, within GFF4554 at 191.378 kb on + strand, within GFF4554 at 191.378 kb on + strand, within GFF4554 at 191.378 kb on + strand, within GFF4554 at 191.378 kb on + strand, within GFF4554 at 191.378 kb on + strand, within GFF4554 at 191.378 kb on + strand, within GFF4554 at 191.378 kb on + strand, within GFF4554 at 191.378 kb on + strand, within GFF4554 at 191.378 kb on + strand, within GFF4554 at 191.378 kb on + strand, within GFF4554 at 191.378 kb on + strand, within GFF4554 at 191.378 kb on + strand, within GFF4554 at 191.379 kb on - strand, within GFF4554 at 191.379 kb on - strand, within GFF4554 at 191.379 kb on - strand, within GFF4554 at 191.379 kb on - strand, within GFF4554 at 191.379 kb on - strand, within GFF4554 at 191.379 kb on - strand, within GFF4554 at 191.379 kb on - strand, within GFF4554 at 191.379 kb on - strand, within GFF4554 at 191.379 kb on - strand, within GFF4554 at 191.379 kb on - strand, within GFF4554 at 191.381 kb on + strand, within GFF4554 at 191.382 kb on - strand, within GFF4554 at 191.382 kb on - strand, within GFF4554 at 191.441 kb on + strand, within GFF4554 at 191.442 kb on - strand, within GFF4554 at 191.442 kb on - strand, within GFF4554 at 191.961 kb on + strand at 191.961 kb on + strand at 191.961 kb on + strand at 191.962 kb on - strand at 191.962 kb on - strand at 191.962 kb on - strand at 191.962 kb on - strand at 191.962 kb on - strand at 192.005 kb on + strand at 192.005 kb on + strand at 192.005 kb on + strand at 192.006 kb on - strand at 192.006 kb on - strand at 192.006 kb on - strand at 192.060 kb on + strand at 192.060 kb on + strand at 192.060 kb on + strand at 192.060 kb on + strand at 192.060 kb on + strand at 192.060 kb on + strand at 192.061 kb on - strand at 192.061 kb on - strand at 192.061 kb on - strand at 192.061 kb on - strand at 192.061 kb on - strand at 192.061 kb on - strand at 192.061 kb on - strand at 192.061 kb on - strand at 192.066 kb on + strand at 192.066 kb on + strand at 192.066 kb on + strand at 192.066 kb on + strand at 192.067 kb on - strand at 192.067 kb on - strand at 192.067 kb on - strand at 192.067 kb on - strand at 192.067 kb on - strand at 192.067 kb on - strand at 192.075 kb on + strand at 192.086 kb on + strand at 192.086 kb on + strand at 192.087 kb on - strand at 192.087 kb on - strand at 192.129 kb on + strand at 192.129 kb on + strand at 192.129 kb on + strand at 192.130 kb on - strand at 192.130 kb on - strand at 192.130 kb on - strand at 192.651 kb on + strand, within GFF4555 at 192.652 kb on - strand, within GFF4555 at 192.652 kb on - strand, within GFF4555 at 192.652 kb on - strand, within GFF4555 at 192.695 kb on + strand, within GFF4555 at 192.695 kb on + strand, within GFF4555 at 192.696 kb on - strand, within GFF4555 at 192.696 kb on - strand, within GFF4555 at 192.696 kb on - strand, within GFF4555 at 192.696 kb on - strand, within GFF4555 at 193.232 kb on + strand, within GFF4556 at 193.232 kb on + strand, within GFF4556 at 193.232 kb on + strand, within GFF4556 at 193.232 kb on + strand, within GFF4556 at 193.232 kb on + strand, within GFF4556 at 193.232 kb on + strand, within GFF4556 at 193.232 kb on + strand, within GFF4556 at 193.233 kb on - strand, within GFF4556 at 193.233 kb on - strand, within GFF4556 at 193.233 kb on - strand, within GFF4556 at 193.233 kb on - strand, within GFF4556 at 193.233 kb on - strand, within GFF4556 at 193.233 kb on - strand, within GFF4556 at 193.233 kb on - strand, within GFF4556 at 193.233 kb on - strand, within GFF4556 at 193.233 kb on - strand, within GFF4556 at 193.505 kb on + strand, within GFF4556 at 193.505 kb on + strand, within GFF4556 at 193.505 kb on + strand, within GFF4556 at 193.506 kb on - strand, within GFF4556 at 193.506 kb on - strand, within GFF4556 at 193.506 kb on - strand, within GFF4556 at 193.506 kb on - strand, within GFF4556 at 193.506 kb on - strand, within GFF4556 at 193.506 kb on - strand, within GFF4556 at 193.532 kb on + strand, within GFF4556 at 193.533 kb on - strand, within GFF4556 at 193.756 kb on + strand, within GFF4557 at 193.756 kb on + strand, within GFF4557 at 193.756 kb on + strand, within GFF4557 at 193.756 kb on + strand, within GFF4557 at 193.757 kb on - strand, within GFF4557 at 193.757 kb on - strand, within GFF4557
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 191,074 - -1.5 191,074 - +2.1 191,074 - -0.5 191,074 - -1.1 191,086 + +1.1 191,086 + +0.7 191,378 + GFF4554 0.32 -1.1 191,378 + GFF4554 0.32 -0.8 191,378 + GFF4554 0.32 -1.7 191,378 + GFF4554 0.32 +0.3 191,378 + GFF4554 0.32 -1.6 191,378 + GFF4554 0.32 -1.3 191,378 + GFF4554 0.32 -1.1 191,378 + GFF4554 0.32 -1.4 191,378 + GFF4554 0.32 -0.1 191,378 + GFF4554 0.32 -2.3 191,378 + GFF4554 0.32 -0.1 191,378 + GFF4554 0.32 -0.1 191,378 + GFF4554 0.32 -1.5 191,379 - GFF4554 0.32 -2.3 191,379 - GFF4554 0.32 +0.2 191,379 - GFF4554 0.32 -2.2 191,379 - GFF4554 0.32 -2.9 191,379 - GFF4554 0.32 -1.5 191,379 - GFF4554 0.32 -2.3 191,379 - GFF4554 0.32 +0.0 191,379 - GFF4554 0.32 -1.1 191,379 - GFF4554 0.32 +0.5 191,379 - GFF4554 0.32 +1.7 191,381 + GFF4554 0.33 -0.4 191,382 - GFF4554 0.33 -0.1 191,382 - GFF4554 0.33 -0.3 191,441 + GFF4554 0.39 -0.3 191,442 - GFF4554 0.40 +1.4 191,442 - GFF4554 0.40 +0.6 191,961 + +0.3 191,961 + -3.0 191,961 + -1.2 191,962 - -0.6 191,962 - -1.3 191,962 - -1.5 191,962 - +1.3 191,962 - -2.0 192,005 + +1.8 192,005 + -1.7 192,005 + -1.0 192,006 - +0.4 192,006 - +0.1 192,006 - +2.2 192,060 + -1.0 192,060 + +0.9 192,060 + -0.7 192,060 + +1.2 192,060 + -1.9 192,060 + +1.1 192,061 - -1.1 192,061 - -1.0 192,061 - -0.3 192,061 - -1.2 192,061 - -0.9 192,061 - +0.9 192,061 - -0.5 192,061 - -1.1 192,066 + -1.1 192,066 + -1.9 192,066 + +3.6 192,066 + +0.6 192,067 - +1.5 192,067 - -0.0 192,067 - +0.3 192,067 - -2.8 192,067 - -1.1 192,067 - +0.3 192,075 + +0.5 192,086 + +0.7 192,086 + +0.4 192,087 - +0.3 192,087 - -1.9 192,129 + -3.0 192,129 + +1.3 192,129 + -4.1 192,130 - +1.4 192,130 - -1.1 192,130 - -0.1 192,651 + GFF4555 0.76 -2.0 192,652 - GFF4555 0.76 -0.0 192,652 - GFF4555 0.76 -0.2 192,652 - GFF4555 0.76 +2.2 192,695 + GFF4555 0.82 +0.2 192,695 + GFF4555 0.82 -0.8 192,696 - GFF4555 0.82 -2.4 192,696 - GFF4555 0.82 +0.9 192,696 - GFF4555 0.82 +0.4 192,696 - GFF4555 0.82 -1.1 193,232 + GFF4556 0.51 -0.9 193,232 + GFF4556 0.51 +2.2 193,232 + GFF4556 0.51 -0.4 193,232 + GFF4556 0.51 +0.3 193,232 + GFF4556 0.51 +0.1 193,232 + GFF4556 0.51 +1.2 193,232 + GFF4556 0.51 -1.1 193,233 - GFF4556 0.51 -0.2 193,233 - GFF4556 0.51 +0.1 193,233 - GFF4556 0.51 +1.9 193,233 - GFF4556 0.51 -1.4 193,233 - GFF4556 0.51 +0.3 193,233 - GFF4556 0.51 -0.9 193,233 - GFF4556 0.51 -0.8 193,233 - GFF4556 0.51 +0.5 193,233 - GFF4556 0.51 +1.0 193,505 + GFF4556 0.85 -3.9 193,505 + GFF4556 0.85 +0.9 193,505 + GFF4556 0.85 +1.1 193,506 - GFF4556 0.85 +1.3 193,506 - GFF4556 0.85 -1.8 193,506 - GFF4556 0.85 +0.1 193,506 - GFF4556 0.85 -2.7 193,506 - GFF4556 0.85 +0.2 193,506 - GFF4556 0.85 -2.3 193,532 + GFF4556 0.88 -0.9 193,533 - GFF4556 0.88 -1.6 193,756 + GFF4557 0.13 -2.5 193,756 + GFF4557 0.13 -0.7 193,756 + GFF4557 0.13 -0.9 193,756 + GFF4557 0.13 +0.9 193,757 - GFF4557 0.13 -2.5 193,757 - GFF4557 0.13 -2.5
Or see this region's nucleotide sequence