Strain Fitness in Variovorax sp. SCN45 around GFF4553

Experiment: Community=arabino-guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4551 and GFF4552 are separated by 8 nucleotidesGFF4552 and GFF4553 are separated by 51 nucleotidesGFF4553 and GFF4554 are separated by 62 nucleotides GFF4551 - Putative preQ0 transporter YhhQ, at 188,784 to 189,353 GFF4551 GFF4552 - Nitrilotriacetate monooxygenase component B (EC 1.14.13.-), at 189,362 to 189,991 GFF4552 GFF4553 - RNA chaperone ProQ, at 190,043 to 191,032 GFF4553 GFF4554 - Protease HtpX, at 191,095 to 191,970 GFF4554 Position (kb) 190 191 192Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 189.392 kb on + strandat 189.392 kb on + strandat 189.392 kb on + strandat 189.392 kb on + strandat 189.392 kb on + strandat 189.392 kb on + strandat 189.392 kb on + strandat 189.393 kb on - strandat 189.393 kb on - strandat 189.393 kb on - strandat 189.393 kb on - strandat 189.393 kb on - strandat 189.393 kb on - strandat 189.509 kb on + strand, within GFF4552at 189.533 kb on + strand, within GFF4552at 189.533 kb on + strand, within GFF4552at 189.534 kb on - strand, within GFF4552at 189.534 kb on - strand, within GFF4552at 189.534 kb on - strand, within GFF4552at 189.534 kb on - strand, within GFF4552at 189.534 kb on - strand, within GFF4552at 189.534 kb on - strand, within GFF4552at 189.534 kb on - strand, within GFF4552at 189.534 kb on - strand, within GFF4552at 189.534 kb on - strand, within GFF4552at 189.890 kb on + strand, within GFF4552at 189.890 kb on + strand, within GFF4552at 189.890 kb on + strand, within GFF4552at 189.890 kb on + strand, within GFF4552at 189.890 kb on + strand, within GFF4552at 189.890 kb on + strand, within GFF4552at 189.890 kb on + strand, within GFF4552at 189.890 kb on + strand, within GFF4552at 189.890 kb on + strand, within GFF4552at 189.890 kb on + strand, within GFF4552at 189.890 kb on + strand, within GFF4552at 189.891 kb on - strand, within GFF4552at 189.891 kb on - strand, within GFF4552at 189.891 kb on - strand, within GFF4552at 189.891 kb on - strand, within GFF4552at 189.891 kb on - strand, within GFF4552at 189.941 kb on + strandat 189.941 kb on + strandat 189.941 kb on + strandat 189.941 kb on + strandat 189.941 kb on + strandat 189.942 kb on - strandat 189.942 kb on - strandat 189.942 kb on - strandat 189.942 kb on - strandat 190.358 kb on + strand, within GFF4553at 190.358 kb on + strand, within GFF4553at 190.358 kb on + strand, within GFF4553at 190.359 kb on - strand, within GFF4553at 190.406 kb on + strand, within GFF4553at 190.407 kb on - strand, within GFF4553at 190.407 kb on - strand, within GFF4553at 190.407 kb on - strand, within GFF4553at 190.407 kb on - strand, within GFF4553at 190.493 kb on + strand, within GFF4553at 190.494 kb on - strand, within GFF4553at 190.494 kb on - strand, within GFF4553at 190.700 kb on + strand, within GFF4553at 190.700 kb on + strand, within GFF4553at 190.700 kb on + strand, within GFF4553at 190.700 kb on + strand, within GFF4553at 190.700 kb on + strand, within GFF4553at 190.700 kb on + strand, within GFF4553at 190.700 kb on + strand, within GFF4553at 190.700 kb on + strand, within GFF4553at 190.700 kb on + strand, within GFF4553at 190.701 kb on - strand, within GFF4553at 190.701 kb on - strand, within GFF4553at 190.701 kb on - strand, within GFF4553at 190.701 kb on - strand, within GFF4553at 190.701 kb on - strand, within GFF4553at 190.701 kb on - strand, within GFF4553at 190.701 kb on - strand, within GFF4553at 190.701 kb on - strand, within GFF4553at 190.701 kb on - strand, within GFF4553at 190.850 kb on + strand, within GFF4553at 190.850 kb on + strand, within GFF4553at 190.850 kb on + strand, within GFF4553at 190.850 kb on + strand, within GFF4553at 190.850 kb on + strand, within GFF4553at 190.850 kb on + strand, within GFF4553at 190.850 kb on + strand, within GFF4553at 190.850 kb on + strand, within GFF4553at 190.850 kb on + strand, within GFF4553at 190.850 kb on + strand, within GFF4553at 190.850 kb on + strand, within GFF4553at 190.850 kb on + strand, within GFF4553at 190.850 kb on + strand, within GFF4553at 190.850 kb on + strand, within GFF4553at 190.850 kb on + strand, within GFF4553at 190.850 kb on + strand, within GFF4553at 190.850 kb on + strand, within GFF4553at 190.850 kb on + strand, within GFF4553at 190.850 kb on + strand, within GFF4553at 190.850 kb on + strand, within GFF4553at 190.850 kb on + strand, within GFF4553at 190.850 kb on + strand, within GFF4553at 190.850 kb on + strand, within GFF4553at 190.850 kb on + strand, within GFF4553at 190.850 kb on + strand, within GFF4553at 190.850 kb on + strand, within GFF4553at 190.851 kb on - strand, within GFF4553at 190.851 kb on - strand, within GFF4553at 190.851 kb on - strand, within GFF4553at 190.851 kb on - strand, within GFF4553at 190.851 kb on - strand, within GFF4553at 190.851 kb on - strand, within GFF4553at 190.851 kb on - strand, within GFF4553at 190.851 kb on - strand, within GFF4553at 190.851 kb on - strand, within GFF4553at 190.851 kb on - strand, within GFF4553at 190.851 kb on - strand, within GFF4553at 190.851 kb on - strand, within GFF4553at 190.851 kb on - strand, within GFF4553at 190.851 kb on - strand, within GFF4553at 190.851 kb on - strand, within GFF4553at 190.851 kb on - strand, within GFF4553at 190.851 kb on - strand, within GFF4553at 190.851 kb on - strand, within GFF4553at 190.851 kb on - strand, within GFF4553at 190.851 kb on - strand, within GFF4553at 190.851 kb on - strand, within GFF4553at 190.851 kb on - strand, within GFF4553at 190.851 kb on - strand, within GFF4553at 190.851 kb on - strand, within GFF4553at 190.851 kb on - strand, within GFF4553at 190.851 kb on - strand, within GFF4553at 190.851 kb on - strand, within GFF4553at 190.851 kb on - strand, within GFF4553at 190.851 kb on - strand, within GFF4553at 190.851 kb on - strand, within GFF4553at 190.851 kb on - strand, within GFF4553at 190.851 kb on - strand, within GFF4553at 190.851 kb on - strand, within GFF4553at 190.851 kb on - strand, within GFF4553at 191.073 kb on + strandat 191.073 kb on + strandat 191.074 kb on - strandat 191.074 kb on - strandat 191.074 kb on - strandat 191.074 kb on - strandat 191.086 kb on + strandat 191.086 kb on + strandat 191.378 kb on + strand, within GFF4554at 191.378 kb on + strand, within GFF4554at 191.378 kb on + strand, within GFF4554at 191.378 kb on + strand, within GFF4554at 191.378 kb on + strand, within GFF4554at 191.378 kb on + strand, within GFF4554at 191.378 kb on + strand, within GFF4554at 191.378 kb on + strand, within GFF4554at 191.378 kb on + strand, within GFF4554at 191.378 kb on + strand, within GFF4554at 191.378 kb on + strand, within GFF4554at 191.378 kb on + strand, within GFF4554at 191.378 kb on + strand, within GFF4554at 191.379 kb on - strand, within GFF4554at 191.379 kb on - strand, within GFF4554at 191.379 kb on - strand, within GFF4554at 191.379 kb on - strand, within GFF4554at 191.379 kb on - strand, within GFF4554at 191.379 kb on - strand, within GFF4554at 191.379 kb on - strand, within GFF4554at 191.379 kb on - strand, within GFF4554at 191.379 kb on - strand, within GFF4554at 191.379 kb on - strand, within GFF4554at 191.381 kb on + strand, within GFF4554at 191.382 kb on - strand, within GFF4554at 191.382 kb on - strand, within GFF4554at 191.441 kb on + strand, within GFF4554at 191.442 kb on - strand, within GFF4554at 191.442 kb on - strand, within GFF4554at 191.961 kb on + strandat 191.961 kb on + strandat 191.961 kb on + strandat 191.962 kb on - strandat 191.962 kb on - strandat 191.962 kb on - strandat 191.962 kb on - strandat 191.962 kb on - strandat 192.005 kb on + strandat 192.005 kb on + strandat 192.005 kb on + strandat 192.006 kb on - strandat 192.006 kb on - strandat 192.006 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4
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189,392 + +1.7
189,392 + -0.7
189,392 + -0.5
189,392 + +1.1
189,392 + +2.3
189,392 + -1.9
189,392 + -1.1
189,393 - +0.7
189,393 - -1.6
189,393 - +2.4
189,393 - -0.7
189,393 - -3.4
189,393 - -0.5
189,509 + GFF4552 0.23 -0.4
189,533 + GFF4552 0.27 -2.6
189,533 + GFF4552 0.27 +1.9
189,534 - GFF4552 0.27 +1.9
189,534 - GFF4552 0.27 -0.1
189,534 - GFF4552 0.27 -2.4
189,534 - GFF4552 0.27 -0.0
189,534 - GFF4552 0.27 -0.3
189,534 - GFF4552 0.27 -1.8
189,534 - GFF4552 0.27 +0.5
189,534 - GFF4552 0.27 -2.5
189,534 - GFF4552 0.27 -1.6
189,890 + GFF4552 0.84 +0.9
189,890 + GFF4552 0.84 -0.5
189,890 + GFF4552 0.84 -0.1
189,890 + GFF4552 0.84 -0.7
189,890 + GFF4552 0.84 -1.3
189,890 + GFF4552 0.84 -0.1
189,890 + GFF4552 0.84 +0.7
189,890 + GFF4552 0.84 +1.3
189,890 + GFF4552 0.84 -0.2
189,890 + GFF4552 0.84 -0.7
189,890 + GFF4552 0.84 -0.1
189,891 - GFF4552 0.84 -2.9
189,891 - GFF4552 0.84 -0.4
189,891 - GFF4552 0.84 -0.8
189,891 - GFF4552 0.84 +0.5
189,891 - GFF4552 0.84 +2.6
189,941 + +0.8
189,941 + +0.1
189,941 + +0.0
189,941 + +0.9
189,941 + -0.9
189,942 - -0.7
189,942 - +0.4
189,942 - -0.3
189,942 - -0.3
190,358 + GFF4553 0.32 +1.3
190,358 + GFF4553 0.32 +1.3
190,358 + GFF4553 0.32 -2.5
190,359 - GFF4553 0.32 +1.2
190,406 + GFF4553 0.37 -1.5
190,407 - GFF4553 0.37 +1.5
190,407 - GFF4553 0.37 -0.9
190,407 - GFF4553 0.37 -2.3
190,407 - GFF4553 0.37 +1.3
190,493 + GFF4553 0.45 -0.7
190,494 - GFF4553 0.46 +0.1
190,494 - GFF4553 0.46 +1.5
190,700 + GFF4553 0.66 +0.1
190,700 + GFF4553 0.66 +0.3
190,700 + GFF4553 0.66 +1.2
190,700 + GFF4553 0.66 -0.6
190,700 + GFF4553 0.66 -1.7
190,700 + GFF4553 0.66 -1.7
190,700 + GFF4553 0.66 -1.7
190,700 + GFF4553 0.66 -1.9
190,700 + GFF4553 0.66 -0.6
190,701 - GFF4553 0.66 -1.8
190,701 - GFF4553 0.66 -0.9
190,701 - GFF4553 0.66 +0.2
190,701 - GFF4553 0.66 -1.2
190,701 - GFF4553 0.66 +0.1
190,701 - GFF4553 0.66 +0.5
190,701 - GFF4553 0.66 -2.0
190,701 - GFF4553 0.66 -2.1
190,701 - GFF4553 0.66 +0.4
190,850 + GFF4553 0.82 -2.3
190,850 + GFF4553 0.82 -1.3
190,850 + GFF4553 0.82 -0.9
190,850 + GFF4553 0.82 -1.6
190,850 + GFF4553 0.82 -1.4
190,850 + GFF4553 0.82 +0.1
190,850 + GFF4553 0.82 +0.1
190,850 + GFF4553 0.82 -0.8
190,850 + GFF4553 0.82 -1.6
190,850 + GFF4553 0.82 -0.9
190,850 + GFF4553 0.82 -0.1
190,850 + GFF4553 0.82 +1.7
190,850 + GFF4553 0.82 +0.0
190,850 + GFF4553 0.82 -0.1
190,850 + GFF4553 0.82 -2.5
190,850 + GFF4553 0.82 -0.7
190,850 + GFF4553 0.82 -1.1
190,850 + GFF4553 0.82 -0.4
190,850 + GFF4553 0.82 -0.7
190,850 + GFF4553 0.82 +0.3
190,850 + GFF4553 0.82 -1.0
190,850 + GFF4553 0.82 -2.8
190,850 + GFF4553 0.82 +2.4
190,850 + GFF4553 0.82 -4.7
190,850 + GFF4553 0.82 +0.0
190,850 + GFF4553 0.82 +0.1
190,851 - GFF4553 0.82 +0.4
190,851 - GFF4553 0.82 -2.8
190,851 - GFF4553 0.82 -1.5
190,851 - GFF4553 0.82 -0.9
190,851 - GFF4553 0.82 +3.5
190,851 - GFF4553 0.82 -1.6
190,851 - GFF4553 0.82 +1.1
190,851 - GFF4553 0.82 -0.7
190,851 - GFF4553 0.82 +3.2
190,851 - GFF4553 0.82 -2.3
190,851 - GFF4553 0.82 -0.4
190,851 - GFF4553 0.82 +0.5
190,851 - GFF4553 0.82 -1.9
190,851 - GFF4553 0.82 -0.7
190,851 - GFF4553 0.82 -2.5
190,851 - GFF4553 0.82 +0.1
190,851 - GFF4553 0.82 +0.4
190,851 - GFF4553 0.82 -0.5
190,851 - GFF4553 0.82 -1.1
190,851 - GFF4553 0.82 -3.9
190,851 - GFF4553 0.82 +2.1
190,851 - GFF4553 0.82 -3.6
190,851 - GFF4553 0.82 +2.0
190,851 - GFF4553 0.82 -0.5
190,851 - GFF4553 0.82 -3.3
190,851 - GFF4553 0.82 -2.1
190,851 - GFF4553 0.82 -1.2
190,851 - GFF4553 0.82 +0.0
190,851 - GFF4553 0.82 -2.8
190,851 - GFF4553 0.82 +0.3
190,851 - GFF4553 0.82 -4.0
190,851 - GFF4553 0.82 -1.8
190,851 - GFF4553 0.82 -0.0
190,851 - GFF4553 0.82 -0.7
191,073 + +0.8
191,073 + -0.9
191,074 - -1.5
191,074 - +2.1
191,074 - -0.5
191,074 - -1.1
191,086 + +1.1
191,086 + +0.7
191,378 + GFF4554 0.32 -1.1
191,378 + GFF4554 0.32 -0.8
191,378 + GFF4554 0.32 -1.7
191,378 + GFF4554 0.32 +0.3
191,378 + GFF4554 0.32 -1.6
191,378 + GFF4554 0.32 -1.3
191,378 + GFF4554 0.32 -1.1
191,378 + GFF4554 0.32 -1.4
191,378 + GFF4554 0.32 -0.1
191,378 + GFF4554 0.32 -2.3
191,378 + GFF4554 0.32 -0.1
191,378 + GFF4554 0.32 -0.1
191,378 + GFF4554 0.32 -1.5
191,379 - GFF4554 0.32 -2.3
191,379 - GFF4554 0.32 +0.2
191,379 - GFF4554 0.32 -2.2
191,379 - GFF4554 0.32 -2.9
191,379 - GFF4554 0.32 -1.5
191,379 - GFF4554 0.32 -2.3
191,379 - GFF4554 0.32 +0.0
191,379 - GFF4554 0.32 -1.1
191,379 - GFF4554 0.32 +0.5
191,379 - GFF4554 0.32 +1.7
191,381 + GFF4554 0.33 -0.4
191,382 - GFF4554 0.33 -0.1
191,382 - GFF4554 0.33 -0.3
191,441 + GFF4554 0.39 -0.3
191,442 - GFF4554 0.40 +1.4
191,442 - GFF4554 0.40 +0.6
191,961 + +0.3
191,961 + -3.0
191,961 + -1.2
191,962 - -0.6
191,962 - -1.3
191,962 - -1.5
191,962 - +1.3
191,962 - -2.0
192,005 + +1.8
192,005 + -1.7
192,005 + -1.0
192,006 - +0.4
192,006 - +0.1
192,006 - +2.2

Or see this region's nucleotide sequence