Strain Fitness in Variovorax sp. SCN45 around GFF4337

Experiment: Community=arabino-guar; Passage=4

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF4336 and GFF4337 are separated by 46 nucleotidesGFF4337 and GFF4338 are separated by 2 nucleotidesGFF4338 and GFF4339 are separated by 39 nucleotides GFF4336 - BUG/TctC family periplasmic protein, at 259,587 to 260,573 GFF4336 GFF4337 - Electron transfer flavoprotein, alpha subunit, at 260,620 to 261,552 GFF4337 GFF4338 - Electron transfer flavoprotein, beta subunit, at 261,555 to 262,304 GFF4338 GFF4339 - BUG/TctC family periplasmic protein, at 262,344 to 263,312 GFF4339 Position (kb) 260 261 262Strain fitness (log2 ratio) -1 0 1 2at 259.651 kb on + strandat 259.814 kb on - strand, within GFF4336at 259.834 kb on + strand, within GFF4336at 259.834 kb on + strand, within GFF4336at 260.009 kb on - strand, within GFF4336at 260.622 kb on - strandat 260.789 kb on + strand, within GFF4337at 260.790 kb on - strand, within GFF4337at 260.790 kb on - strand, within GFF4337at 261.171 kb on - strand, within GFF4337at 261.458 kb on - strand, within GFF4337at 262.267 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4
remove
259,651 + +0.3
259,814 - GFF4336 0.23 -0.2
259,834 + GFF4336 0.25 +0.2
259,834 + GFF4336 0.25 -1.6
260,009 - GFF4336 0.43 -0.6
260,622 - +1.4
260,789 + GFF4337 0.18 -0.8
260,790 - GFF4337 0.18 -0.3
260,790 - GFF4337 0.18 +2.6
261,171 - GFF4337 0.59 +0.4
261,458 - GFF4337 0.90 +1.5
262,267 + +0.3

Or see this region's nucleotide sequence